View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11377_high_4 (Length: 291)
Name: NF11377_high_4
Description: NF11377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11377_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 17 - 249
Target Start/End: Original strand, 6625597 - 6625829
Alignment:
| Q |
17 |
agttggtagcttccaaaagtaagttttcatgaagggccattttttggaaggnnnnnnnnntctaaaagacacaatgacgaaaatatcgagtgcgaataat |
116 |
Q |
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| T |
6625597 |
agttggtagcttccaaaagtaagttttcatgaagggccattttttggaaggaaaaaaaaatctaaaagacacaatgacgaaaataacgagtgcgaataat |
6625696 |
T |
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| Q |
117 |
aaacaccatttgcttgaacttaaattgttggcgtcgtttgtatgttcccaaaagcactaataaaatgaagcccatttgcttatcgataaatctaagtaac |
216 |
Q |
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||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
6625697 |
aaagcccatttgcttgaacataaattgttggcgtcgtttgtatgttcccaaaagcactaataaaatgaagcccatttgcttatccataaatctaagtaaa |
6625796 |
T |
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| Q |
217 |
ttgtatctgagggtgtaaaaaataattcgttaa |
249 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
6625797 |
ttgtatctgagggtgtaaaaaataattcgttaa |
6625829 |
T |
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