View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11377_low_5 (Length: 272)
Name: NF11377_low_5
Description: NF11377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11377_low_5 |
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| [»] chr8 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 268; Significance: 1e-150; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 268; E-Value: 1e-150
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 4244238 - 4244509
Alignment:
| Q |
1 |
ttgttacatccttaaaagcttcaacaacaaaatgaaagaaacttttagaaggtggttttttgtaagtgttggaaccaaacacttgttgtctaattgaaat |
100 |
Q |
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| T |
4244238 |
ttgttacatccttaaaagcttcaacaacaaaatgaaagaaacttttagaaggtggttttttgtaagtgttggaaccaaacacttgttgtctaattgaaat |
4244337 |
T |
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| Q |
101 |
gtcatgaaaatcatcatcatgacttttgataccaaactcaacgttggttttaagtgatgaagcaacaccttcaactccaccatgtttctgaagtgtatca |
200 |
Q |
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| T |
4244338 |
gtcatgaaaatcatcatcatgacttctgataccaaactcaacgttggttttaagtgatgaagcaacaccttcaactccaccatgtttctgaagtgtatca |
4244437 |
T |
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| Q |
201 |
atgcttttctctttgacaatatctatgagagtttcttgatcaatggtaaaagagtgaggtgaacttaaatca |
272 |
Q |
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| T |
4244438 |
atgcttttctctttgacaatatctatgagagtttcttgatcaatggtaaaagagtgaggtgaacttaaatca |
4244509 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 6187294 - 6187568
Alignment:
| Q |
1 |
ttgttacatccttaaaagcttcaacaacaaaatgaaagaaacttttagaaggtggttttttgtaagtgttggaaccaaacacttgttgtctaattgaaat |
100 |
Q |
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|||| ||||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |
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| T |
6187294 |
ttgtaacatccttaaaagcttcaataacaaaatgaatgaaactcttagaaggtggttttttgtaagtgttggaaccaaacacttgtttcctaattgcaat |
6187393 |
T |
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| Q |
101 |
gtcatgaaaatcatca---tcatgacttttgataccaaactcaacgttggttttaagtgatgaagcaacaccttcaactccaccatgtttctgaagtgta |
197 |
Q |
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| T |
6187394 |
atcttcaaaatcattagtatcatcacttttgataccaaactcaatgttggttttaagtgatgaagcaacaccttcaactccaccatgattttgaagtgta |
6187493 |
T |
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| Q |
198 |
tcaatgcttttctctttgacaatatctatgagagtttcttgatcaatggtaaaagagtgaggtgaacttaaatca |
272 |
Q |
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| T |
6187494 |
tcaatgtttttctctttgacaatatctatgagagtttcttgatcaatggtaaaagagtgtggtaaatttaaatca |
6187568 |
T |
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