View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11378_high_11 (Length: 256)
Name: NF11378_high_11
Description: NF11378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11378_high_11 |
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Alignment Details
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 2803443 - 2803643
Alignment:
| Q |
1 |
ccgagtgggggtggtcctttgctttgaatgtgtaatcagagcatggcagtgacagttgtggtatgtattcatcctctttaccgagaaaaccgctgctaaa |
100 |
Q |
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| T |
2803443 |
ccgagtgggggtggtcctttgctttgaatgtgtaatcagagcatggcagtgacagttgtggtatgtattcatcctctttaccgagaaaaccgctgctaaa |
2803542 |
T |
|
| Q |
101 |
cattgaggcatgatgttgaatccatcacaaagtacaatcaagtagcatctcgaaaaccagcttgtcctattgaacctctttaacattaacataaacatta |
200 |
Q |
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| T |
2803543 |
cattgaggcatgatgttgaatccatcacaaagtacaatcaagtagcatctcgaaaaccagcttgtcctattgaacctctttaacattaacattaacatta |
2803642 |
T |
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| Q |
201 |
a |
201 |
Q |
| |
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| T |
2803643 |
a |
2803643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 180 - 219
Target Start/End: Original strand, 2803634 - 2803673
Alignment:
| Q |
180 |
ttaacattaacataaacattaatattttgatcaaattaac |
219 |
Q |
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||||||||||||||||||||||||||||||| |||||||| |
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| T |
2803634 |
ttaacattaacataaacattaatattttgataaaattaac |
2803673 |
T |
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