View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11378_high_2 (Length: 454)
Name: NF11378_high_2
Description: NF11378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11378_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 420; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 11 - 438
Target Start/End: Complemental strand, 43619369 - 43618942
Alignment:
| Q |
11 |
cataggtgatataagatgctaagtagaaattaatgatttaccgaatcataccaatttagctagatgagcataaaacaaagcagatagaggtgtttgctca |
110 |
Q |
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| T |
43619369 |
cataggtgatataagatgctaagtagaaattaatgatttaccgaatcataccaatttagctagatgagcataaaacaaagcagatagaggtgtttgctca |
43619270 |
T |
|
| Q |
111 |
gcaggtttgacgaccatggtgcacccagcagctaagcaagggctaaccttgacaaagaacagggaagtgggaaagttccaaggaataatgtgtccaacaa |
210 |
Q |
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| T |
43619269 |
gcaggtttgacgaccatggtgcacccagcagctaagcaagggctaaccttgacaaagaacagggaagtgggaaagttccaaggaataatgtgtccaacaa |
43619170 |
T |
|
| Q |
211 |
caccaattggttccatcaatgtataagcatggaactctcttgcaacttttaatacctctccatgaattttatcagctgcacctgcatagtaacgaagtgt |
310 |
Q |
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| T |
43619169 |
caccaattggttccatcaatgtataagcatggaactctcttgcaacttttaatacctctccatgaattttatcagctgcacctgcatagtaacgaagtgt |
43619070 |
T |
|
| Q |
311 |
atttgctgctgagggaatgtcaagagccttacacatatggtacaactttcctgcatcaatggcatcaagtgccgctagctcttctatgttttcatcaatt |
410 |
Q |
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| T |
43619069 |
atttgctgctgagggaatgtcaagagccttacacatatggtacaactttcctgcatcaatggcatcaagtgctgctagctcttctatgttttcatcaatt |
43618970 |
T |
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| Q |
411 |
aggtctgcaaatttcatcataagttttg |
438 |
Q |
| |
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| T |
43618969 |
aggtccgcaaatttcatcataagttttg |
43618942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 66 - 430
Target Start/End: Complemental strand, 43626692 - 43626328
Alignment:
| Q |
66 |
ttagctagatgagcataaaacaaagcagatagaggtgtttgctcagcaggtttgacgaccatggtgcacccagcagctaagcaagggctaaccttgacaa |
165 |
Q |
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| T |
43626692 |
ttagctagatgggcataaaacaaagcagaaagaggtgtttgttcagcaggtttgagaaccatggtgcacccagcagctaaggaagggctaactttggtga |
43626593 |
T |
|
| Q |
166 |
agaacagggaagtgggaaagttccaaggaataatgtgtccaacaacaccaattggttccatcaatgtataagcatggaactctcttgcaacttttaatac |
265 |
Q |
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| T |
43626592 |
agaaaaccatagtgggagcattccatggaatgatgtgtcccacaacaccaattggttccatcagtgtgtatgcatggaattggccagaagattttaatac |
43626493 |
T |
|
| Q |
266 |
ctctccatgaattttatcagctgcacctgcatagtaacgaagtgtatttgctgctgagggaatgtcaagagccttacacatatggtacaactttcctgca |
365 |
Q |
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| T |
43626492 |
ctcaccatgaattttatcagcagcacctgcatagtaacgtagtgtatttgctgctgaaggaatttcaaaagccttgttgataaagtacaccttgccagca |
43626393 |
T |
|
| Q |
366 |
tcaatggcatcaagtgccgctagctcttctatgttttcatcaattaggtctgcaaatttcatcat |
430 |
Q |
| |
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| T |
43626392 |
tcaattgcatctaatgttgctagttcttctatgttttcatcaattagttctgcaaatttcatcat |
43626328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 54; Significance: 8e-22; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 66 - 418
Target Start/End: Original strand, 32408372 - 32408724
Alignment:
| Q |
66 |
ttagctagatgagcataaaacaaagcagatagaggtgtttgctcagcaggtttgacgaccatggtgcacccagcagctaa-gcaagggctaaccttgaca |
164 |
Q |
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||||| ||||||||||||||||||||||| ||||||||||| |||||||| || | ||||| || || |||||||| || ||| | || |||||| || |
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| T |
32408372 |
ttagcaagatgagcataaaacaaagcagagagaggtgtttgttcagcaggcttaagaaccatagtacaaccagcagccaaagcaggagc-aaccttagca |
32408470 |
T |
|
| Q |
165 |
aagaacagggaagtgggaaagttccaaggaataatgtgtccaacaacaccaattggttccatcaatgtataagcatggaactctcttgcaacttttaata |
264 |
Q |
| |
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|||| | | | ||||| ||||||||||||||||||||||| ||||| ||||| |||||||| ||||| || || ||||| | ||| |||||| | |
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|
| T |
32408471 |
gcaaacatagtactaggaaaattccaaggaataatgtgtccaacgacaccgattggctccatcaaagtatatgcgtgcaactcccgagcaggttttaaaa |
32408570 |
T |
|
| Q |
265 |
cctctccatgaattttatcagctgcacctgcatagtaacgaagtgtatttgctgctgagggaatgtcaagagccttacacatatggtacaactttcctgc |
364 |
Q |
| |
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||| || ||||||||||| || ||||| ||||||||||| | | |||||||| || |||||||||| ||| || || | | ||| | ||||| || |
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| T |
32408571 |
ccttgccgtgaattttatccgcagcaccggcatagtaacgtattatatttgctactccaggaatgtcaacagctttgcagaaagtgtatagttttccagc |
32408670 |
T |
|
| Q |
365 |
atcaatggcatcaagtgccgctagctcttctatgttttcatcaattaggtctgc |
418 |
Q |
| |
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||| || | ||| | ||| |||| ||||||||||||| |||||||| |||||| |
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| T |
32408671 |
atctattgtatctaatgctgctatttcttctatgttttgatcaattaagtctgc |
32408724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 96 - 235
Target Start/End: Complemental strand, 32433421 - 32433282
Alignment:
| Q |
96 |
agaggtgtttgctcagcaggtttgacgaccatggtgcacccagcagctaagcaagggctaaccttgacaaagaacagggaagtgggaaagttccaaggaa |
195 |
Q |
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|||||||||||||||||||| || | ||||| || || |||||||| || ||||| | |||| ||||||||| ||| || || |||||||| | |
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| T |
32433421 |
agaggtgtttgctcagcaggcttaagaaccatagtacaaccagcagccaaacaaggagcagccttagcaaagaacataatagttgggaaattccaaggta |
32433322 |
T |
|
| Q |
196 |
taatgtgtccaacaacaccaattggttccatcaatgtata |
235 |
Q |
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| T |
32433321 |
taatgtgtccaacaacaccaataggttccatcaaagtata |
32433282 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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