View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11378_high_9 (Length: 296)
Name: NF11378_high_9
Description: NF11378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11378_high_9 |
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| [»] chr8 (6 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 233; Significance: 1e-129; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 18 - 296
Target Start/End: Complemental strand, 14689345 - 14689061
Alignment:
| Q |
18 |
gtcttgatttcatacaagaattccttcatacttggagatcctttatgcttggaaaaatatta------aattctatgtgtacattcttttcagcaccttt |
111 |
Q |
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| T |
14689345 |
gtcttgatttcatacaagaattccttcatacttggagatcctttatgcttggaaaaatattagtagtaaattctatgtgtacattcttttcagcaccttt |
14689246 |
T |
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| Q |
112 |
aatgatttgtcttggttgtccaaatgatggactgtcacataaaaatgaaacattaattgaattgcttatattccctgcatgcannnnnnnacacatggac |
211 |
Q |
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| T |
14689245 |
aatgatttgtcttggttgtccaaatgatggactgtcacataaaaatgaaacattaattggattgcttatattccctgcatgcatttttttacacatggac |
14689146 |
T |
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| Q |
212 |
caaaatccttgctactgttctaacttctaatttggaatgtggattaaaatttttgattgttgaacaagttctaatcttaattctt |
296 |
Q |
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| T |
14689145 |
caaaatccttgctactgttctaacttctaatttggaatgtggattaaattttttgattgttgaacaagttctaatcttaattctt |
14689061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 18 - 194
Target Start/End: Original strand, 14660869 - 14661043
Alignment:
| Q |
18 |
gtcttgatttcatacaagaattccttcatacttggagatcctttatgcttggaaaaatattaaattctatgtgtacattcttttcagcacctttaatgat |
117 |
Q |
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| T |
14660869 |
gtcttgatttcatactagaatcctttgctacttggagatcctttatatttggaaaaatattaaattatatatgtacaatcttttcagcacctttaatgat |
14660968 |
T |
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| Q |
118 |
ttgtcttggttgtccaaatgatggactgtcacataaaaatgaaacattaattgaattgcttatattccctgcatgca |
194 |
Q |
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| T |
14660969 |
atgtgttggttgttcaaatggtagactgtcacat-aaaatg-aactttaattggattgcttctattccctgcatgca |
14661043 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 66 - 194
Target Start/End: Original strand, 14668868 - 14668992
Alignment:
| Q |
66 |
ttggaaaaatattaaattctatgtgtacattcttttcagcacctttaatgatttgtcttggttgtccaaatgatggactgtcacataaaaatgaaacatt |
165 |
Q |
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| T |
14668868 |
ttggataaatattaaattatatatgtacaatattttcagcacctttaatga--tgtgttggttgttcaaatggtagactgtcacat-aaaatg-aacttt |
14668963 |
T |
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| Q |
166 |
aattgaattgcttatattccctgcatgca |
194 |
Q |
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| T |
14668964 |
aattggattgcttatattccctgcatgca |
14668992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 89 - 194
Target Start/End: Complemental strand, 14672342 - 14672239
Alignment:
| Q |
89 |
tgtacattcttttcagcacctttaatgatttgtcttggttgtccaaatgatggactgtcacataaaaatgaaacattaattgaattgcttatattccctg |
188 |
Q |
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| T |
14672342 |
tgtacaatcttttcagaacctttaatgatatgtgttggttgttcaaatggtagactgtcacat-aaaatg-aactttaattggattgcttatattccctg |
14672245 |
T |
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| Q |
189 |
catgca |
194 |
Q |
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|||||| |
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| T |
14672244 |
catgca |
14672239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 117
Target Start/End: Complemental strand, 14644454 - 14644356
Alignment:
| Q |
18 |
gtcttgatttcatacaagaattccttcatacttggagatcctttatgcttggaaaaatattaaattctatgtgtacattcttttcagcacctttaatgat |
117 |
Q |
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| T |
14644454 |
gtcttgatttcattctagaatcctttgctacttggagatcctttatatttggaaaa-tattaaattatacatgtacaatcttttcagcacttttaatgat |
14644356 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 14678210 - 14678145
Alignment:
| Q |
18 |
gtcttgatttcatacaagaattccttcatacttggagatcctttatgcttggaaaaatattaaatt |
83 |
Q |
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| T |
14678210 |
gtcttgatttcatactagaatcctttgctacttggagatcctttatatttggaaaaatattaaatt |
14678145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 216 - 293
Target Start/End: Complemental strand, 22218789 - 22218712
Alignment:
| Q |
216 |
atccttgctactgttctaacttctaatttggaatgtggattaaaatttttgattgttgaacaagttctaatcttaatt |
293 |
Q |
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| T |
22218789 |
atccttgctattgttctaactgctaatttggaatgtggattaacaattctgattgctaaacaagttctaatcttaatt |
22218712 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 55 - 91
Target Start/End: Original strand, 35244676 - 35244712
Alignment:
| Q |
55 |
atcctttatgcttggaaaaatattaaattctatgtgt |
91 |
Q |
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| T |
35244676 |
atcctttatgcttgggaaaatattaaattctatgtgt |
35244712 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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