View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11378_low_1 (Length: 597)
Name: NF11378_low_1
Description: NF11378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11378_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 527; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 527; E-Value: 0
Query Start/End: Original strand, 18 - 584
Target Start/End: Complemental strand, 27223056 - 27222485
Alignment:
| Q |
18 |
atgcaaaaaccaataatgtacaacagctagtacatcttttggtagaagcataaataattcatcagtaccttcttgaagtgaatttgtaatgatttgatcg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27223056 |
atgcaaaaaccaataatgtacaacagctagtacatcttttggtagaagcataaataattcatcagtaccttcttgaagtgaatttgtaatgatttgatcg |
27222957 |
T |
|
| Q |
118 |
tttgttggatagatgtcatgtgtacgtgtctataaactacgctaaatttagattctactggtcaattagtcatcaaa-tagtaaacatcggtgaaaatag |
216 |
Q |
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| T |
27222956 |
tttgttggatagatgtcatgtgtacgtgtctataaactacgctaaatttagattctactggtcaattagtcatcaaaatagtaaagatcggtgaaaatag |
27222857 |
T |
|
| Q |
217 |
tttttaaattttgtaaattggtacatacctctataattgtaacatctcagtcgaaatatt----atgttaacttttattgttagggattatgatgtggca |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |
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| T |
27222856 |
tttttaaattttgtaaattggtacatacctctataattgtaacatctcagtcgaaatattccttatgttaacttttatcgttagggattatgatgtggca |
27222757 |
T |
|
| Q |
313 |
cgctaactgaatatgcatttcctacttcctacactacacgttgatctcacatcaaagactaatttgcctatggaatttaggtcatatcaaggacaaatgt |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
27222756 |
cgctaactgaatatgcatttcctacttcctacactacacgttgatctcacatcaaagactaatttgcctatggattttaggtcatatcaaggacaaatgt |
27222657 |
T |
|
| Q |
413 |
gtcaataattacaattgtgaggggactaaatactcgaaaattagcctttgatgtgaaggtattgatgtgggataacgattcaacctagagcgaccatgta |
512 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27222656 |
gtcagtaattacaattgtgaggggactaaatactcgaaaattagcctttgatgtgaaggtattgatgtgggataacgattcaacctagagcgaccatgta |
27222557 |
T |
|
| Q |
513 |
ttcggttaatgtgccatataaaaatccctgatgtgagggctatatcctatactccccttttctttcctcttc |
584 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
27222556 |
ttcggttaatgtgccatataaaaatccctgacgtgagggctatatcctatactccccttttctttcctcttc |
27222485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 370 - 432
Target Start/End: Original strand, 25893862 - 25893924
Alignment:
| Q |
370 |
actaatttgcctatggaatttaggtcatatcaaggacaaatgtgtcaataattacaattgtga |
432 |
Q |
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| T |
25893862 |
actaatttgcctatgaaatttaggtcatctcaaggacaaatttttcaataattgcaattgtga |
25893924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 369 - 419
Target Start/End: Original strand, 2505572 - 2505622
Alignment:
| Q |
369 |
gactaatttgcctatggaatttaggtcatatcaaggacaaatgtgtcaata |
419 |
Q |
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|||||||||||||||| ||||| |||||| |||| ||||||| |||||||| |
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| T |
2505572 |
gactaatttgcctatgaaatttgggtcatctcaacgacaaatttgtcaata |
2505622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 402
Target Start/End: Original strand, 31135053 - 31135086
Alignment:
| Q |
369 |
gactaatttgcctatggaatttaggtcatatcaa |
402 |
Q |
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|||||||||||||||| ||||||||||||||||| |
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| T |
31135053 |
gactaatttgcctatgaaatttaggtcatatcaa |
31135086 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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