View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11378_low_11 (Length: 289)
Name: NF11378_low_11
Description: NF11378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11378_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 24 - 280
Target Start/End: Original strand, 16435679 - 16435931
Alignment:
| Q |
24 |
cggaatccttgatagttcagattgtccgacatcaacatggtcagtcaacaaacacagattgttgtatctgggaaggtgtaacttgtgacaatgctactgg |
123 |
Q |
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| T |
16435679 |
cggaatccttgatagttcagattgtccgacatcaacatggtca----acaaacacggattgttgtatctgggaaggtgtaacttgtgacaacgctactgg |
16435774 |
T |
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| Q |
124 |
aagagttacagaattggatctcaacgattcaatgttgaaaggtcagattactctatctgttctagaacttgagtatataagtcacgtggatttaggcttg |
223 |
Q |
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| T |
16435775 |
aagagttacagaattggatctcaacgattcaaggttgaaaggtcagattactctatctgttttagaacttgagtatataagtcacgtgaatttaggcttg |
16435874 |
T |
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| Q |
224 |
aatgattttgatgcgataattattccaatcaatatacacaatataacacattcatct |
280 |
Q |
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| T |
16435875 |
aatgattttgatgcgataattattccaatcaatatacacaatataacacattcatct |
16435931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 21 - 280
Target Start/End: Complemental strand, 16437118 - 16436863
Alignment:
| Q |
21 |
aaccggaatccttgatagttcagattgtccgacatcaacatggtcagtcaacaaacacagattgttgtatctgggaaggtgtaacttgtgacaatgctac |
120 |
Q |
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| T |
16437118 |
aaccggaatccttgatagttccgattgtccgacatcaacatggtca----acaaacacagattgttgtacctgggaaggtgtaacttgtgacaacgctac |
16437023 |
T |
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| Q |
121 |
tggaagagttacagaattggatctcaacgattcaatgttgaaaggtcagattactctatctgttctagaacttgagtatataagtcacgtggatttaggc |
220 |
Q |
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| T |
16437022 |
tggaagagttacagaattggatctcaacgattcaaggttgaaaggtcagattactctatatgttctagaacttgagtatataattcacgtcgatttagac |
16436923 |
T |
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| Q |
221 |
ttgaatgattttgatgcgataattattccaatcaatatacacaatataacacattcatct |
280 |
Q |
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| T |
16436922 |
ttgaatgattttgatgcgataagtattccaatcaatatacacaatataacacattcatct |
16436863 |
T |
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