View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11378_low_14 (Length: 245)
Name: NF11378_low_14
Description: NF11378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11378_low_14 |
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Alignment Details
Target: chr6 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 8 - 228
Target Start/End: Original strand, 14331713 - 14331934
Alignment:
| Q |
8 |
ttattgattaggccaaccaaaattgaagagaaatatggttttccatattaacttttagtttcatttatgcgctagaaatttaaggtaacagggtgcttgc |
107 |
Q |
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| T |
14331713 |
ttattgattaggccaaccgaaattgaagagaaatatggttttccatattaacttttagtttcatttatgcgctagaaatttaaggtaacagggttcttac |
14331812 |
T |
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| Q |
108 |
atcatttactcacatatatgcatgttagtgaaacaactactagaaaaatggcgtgaattcagtaccacataaaat-aaacaaactatagaaaaagttcat |
206 |
Q |
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| T |
14331813 |
atcatttactcacatatatgcatgctagtgaaacaactactagaaaaatggcgtgaattcagtaccacataaaatcaaacaaactatagaaaatgttcat |
14331912 |
T |
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| Q |
207 |
tcattttagaatatatgaatat |
228 |
Q |
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|||||| ||||||||||||||| |
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| T |
14331913 |
tcatttgagaatatatgaatat |
14331934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 8 - 228
Target Start/End: Original strand, 14424723 - 14424944
Alignment:
| Q |
8 |
ttattgattaggccaaccaaaattgaagagaaatatggttttccatattaacttttagtttcatttatgcgctagaaatttaaggtaacagggtgcttgc |
107 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | |
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| T |
14424723 |
ttattgattaggccaaccgaaattgaagagaaatatggttttccatattaacttttagtttcatttatgcgctagaaatttaaggtaacagggttcttac |
14424822 |
T |
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| Q |
108 |
atcatttactcacatatatgcatgttagtgaaacaactactagaaaaatggcgtgaattcagtaccacataaaat-aaacaaactatagaaaaagttcat |
206 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |
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| T |
14424823 |
atcatttactcacatatatgcatgctagtgaaacaactactagaaaaatggcgtgaattcagtaccacataaaatcaaacaaactatagaaaatgttcat |
14424922 |
T |
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| Q |
207 |
tcattttagaatatatgaatat |
228 |
Q |
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|||||| ||||||||||||||| |
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| T |
14424923 |
tcatttgagaatatatgaatat |
14424944 |
T |
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