View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11378_low_2 (Length: 549)
Name: NF11378_low_2
Description: NF11378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11378_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 1 - 474
Target Start/End: Original strand, 30054531 - 30055021
Alignment:
| Q |
1 |
tgatttgatattagaaaactagtagtagccagttgagtaggactgcagattcatcttccaacgggcgatt---gaatccgatgtctgcatccttgtaaac |
97 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||| ||||||| |
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| T |
30054531 |
tgatttgatattagaaaact-gtagtagccagttgagtaggactgcagattcgtcttccaaggggcgattaatgaatccgatgtctgcatccatgtaaac |
30054629 |
T |
|
| Q |
98 |
gtgtttaacagaacaaagatggatatggcatggtttttggttgagagatccaataaaagaaaagttggaaagcaaatgagcagatatgttgcacatcaaa |
197 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
30054630 |
atgtttaacagaacaaagatggatatggcatggtttttggttgagagatccaataaaagaaaagttggaaagcaaatgagcagatatgttgccaatcaaa |
30054729 |
T |
|
| Q |
198 |
ctagcat---------atccatac------atagtcaaattgacaagtgtgtcacttgatatacaaagagtttctgcatcctccacaagtataaaacttt |
282 |
Q |
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||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |
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| T |
30054730 |
ctagcattggtatcaaatccatacccatatatagtcaaattgacaagtgtgtcacttgatatacaaagagtttctacatcctccacaagtctaaaacttt |
30054829 |
T |
|
| Q |
283 |
caatgaccaaagtattcaaccatcatcgccagcgcgaaagtggaagaaccttacagccaaggtggttaaagcaggcaaattaagagagttggggaagtat |
382 |
Q |
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| T |
30054830 |
caatgaccaaagtattcaaccatcatcgccagcgcgaaagtggaagaaccttacagccaaggtggttaaagcaggcaaattaagagagttggggaagtat |
30054929 |
T |
|
| Q |
383 |
actttgttaaatactccaatacgaacgtgaatagaaaggtcaagagaagttaaagtttgagatgaaaataagaaagatggaaattgttgaat |
474 |
Q |
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| T |
30054930 |
actttgttaaatactacaatacgaacgtgaatagaaaggtcaagagaagttaaagtttgagatgaaaataagcaagatggaagttggtgaat |
30055021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 108; Significance: 6e-54; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 409 - 532
Target Start/End: Original strand, 8400207 - 8400330
Alignment:
| Q |
409 |
gtgaatagaaaggtcaagagaagttaaagtttgagatgaaaataagaaagatggaaattgttgaatacttttacaagttatagtgattcctaatagctgg |
508 |
Q |
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||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| |
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| T |
8400207 |
gtgaagagaaaggtgaagagaagttaaagtttgagatgaaaataagaaagatggaaattgttgaataccttaacaagttatagtgattcctaatagctgg |
8400306 |
T |
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| Q |
509 |
acacgatgtgaaacagcgaattct |
532 |
Q |
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| T |
8400307 |
acacgatgtgaaacagcgaattct |
8400330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 410 - 475
Target Start/End: Complemental strand, 5368802 - 5368737
Alignment:
| Q |
410 |
tgaatagaaaggtcaagagaagttaaagtttgagatgaaaataagaaagatggaaattgttgaata |
475 |
Q |
| |
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| T |
5368802 |
tgaatagaaaggtcaagtgacgttaaagtttgagatgaaaataagcaagacggaagttgttgaata |
5368737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 410 - 475
Target Start/End: Complemental strand, 5374559 - 5374494
Alignment:
| Q |
410 |
tgaatagaaaggtcaagagaagttaaagtttgagatgaaaataagaaagatggaaattgttgaata |
475 |
Q |
| |
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||||||||||||||||| || |||||||||||||||||||||||| |||| |||| |||||||||| |
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| T |
5374559 |
tgaatagaaaggtcaagtgacgttaaagtttgagatgaaaataagcaagacggaagttgttgaata |
5374494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 409 - 475
Target Start/End: Complemental strand, 5367997 - 5367931
Alignment:
| Q |
409 |
gtgaatagaaaggtcaagagaagttaaagtttgagatgaaaataagaaagatggaaattgttgaata |
475 |
Q |
| |
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||||||||||||||||||||| ||||| |||||||||||||||||| ||| ||| |||||||||| |
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| T |
5367997 |
gtgaatagaaaggtcaagagacgttaaggtttgagatgaaaataagctagactgaagttgttgaata |
5367931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 409 - 475
Target Start/End: Complemental strand, 5362781 - 5362715
Alignment:
| Q |
409 |
gtgaatagaaaggtcaagagaagttaaagtttgagatgaaaataagaaagatggaaattgttgaata |
475 |
Q |
| |
|
|||||| |||||||||||||| ||||| |||||||||||||||||| ||| ||| |||||||||| |
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| T |
5362781 |
gtgaatggaaaggtcaagagacgttaaggtttgagatgaaaataagctagactgaagttgttgaata |
5362715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 209 - 263
Target Start/End: Original strand, 45906383 - 45906437
Alignment:
| Q |
209 |
atacatagtcaaattgacaagtgtgtcacttgatatacaaagagtttctgcatcc |
263 |
Q |
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||||||||| |||||||||||||| |||||||||| ||||| |||| ||||||| |
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| T |
45906383 |
atacatagttaaattgacaagtgttccacttgatatgcaaagggtttttgcatcc |
45906437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 425 - 475
Target Start/End: Complemental strand, 6889471 - 6889421
Alignment:
| Q |
425 |
agagaagttaaagtttgagatgaaaataagaaagatggaaattgttgaata |
475 |
Q |
| |
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|||||||||||||| ||| ||||||||||| ||| |||||| ||||||||| |
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| T |
6889471 |
agagaagttaaagtgtgacatgaaaataagcaagttggaaaatgttgaata |
6889421 |
T |
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