View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11378_low_4 (Length: 431)
Name: NF11378_low_4
Description: NF11378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11378_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 1 - 413
Target Start/End: Original strand, 11375293 - 11375705
Alignment:
| Q |
1 |
acgtgtgagtaacgtatcggattcgaatccgtttttaattatggaagtatgaattgacttaccgaactcgaggttttcgagtttagtacatgataacaat |
100 |
Q |
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| T |
11375293 |
acgtgtgagtaacgtatcggattcgaatccgtttttaattatggaagtatgaactgatgtaccgaactcgaggttttcgagttttgtacatgatgataat |
11375392 |
T |
|
| Q |
101 |
gttgttgagaatgagtttattaatgaggtgtaagtttgtggaaggcgggagtatgtggaaatgagggaatttgaatttgagttggttgtaacggtttgga |
200 |
Q |
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| T |
11375393 |
gttgttgagaatgagtttattaatgaggtgtaagtttgtggaaggcgggagtatgtggaaatgagggaatttgaatttgagttggttgtaacggtttgga |
11375492 |
T |
|
| Q |
201 |
gtggcaagtgggtattggagtgaatgagtttgggaaattggttggttttgaagaattgggaaattggagagtgaatgatgaagctcaaatgatgagtagt |
300 |
Q |
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| T |
11375493 |
gtggcaagtgggtattggagtgaatgagtttgggaaattggttggttttgaagaattgggaaattggagagtgaatgatgaagctcaaatgatgagtagt |
11375592 |
T |
|
| Q |
301 |
gagtaaacatgttgctctaactgctacgcgcatctatgttgtatctgctgtaggtgagtatacattcgtttgtttgatgtgttcaaaaaatcacagctcc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| |
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| T |
11375593 |
gagtaaacatgttgctctaactgctacgcgcatctatgttgtatctgctgtaggtgagtaaacattcgtttgtttgatgtgttcacaaaatcacagctcc |
11375692 |
T |
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| Q |
401 |
tttttctcggcgg |
413 |
Q |
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| T |
11375693 |
tttttctcggcgg |
11375705 |
T |
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