View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11378_low_6 (Length: 340)
Name: NF11378_low_6
Description: NF11378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11378_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 260; Significance: 1e-145; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 320
Target Start/End: Complemental strand, 14331607 - 14331289
Alignment:
| Q |
1 |
agtttgaacttggaacttaaagaaatggagttcaaatatcctcaaaaagggttgaaaatggccacttcaaaaattatatgcatatttttcgaagttgctt |
100 |
Q |
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| T |
14331607 |
agtttgaccttgtaacttcaagaaatggagttcaaatatccttgaaaactgttgaaaatggccacttcaaaaaatatgtgcatatttttcgaagttgctt |
14331508 |
T |
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| Q |
101 |
attcactctttaatttaactaaaatttgatcacattcaagccttcaaaatgtttatttgtaaacttgtacacaggaaaaaagccaagtgatgctcaagtg |
200 |
Q |
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| T |
14331507 |
atgcactctttaatttaactaaaattagatcacattcaagccttcaaaatgtttatttgtaaacttgtacacaggagaaaagccaagtggtgctcaagtg |
14331408 |
T |
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| Q |
201 |
gatcagttagcgaatcttgtggaaaagtacactcttgcaaaccatctattttggggcttgtggggacttatttcagtaagcttttttcttttcactttta |
300 |
Q |
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| T |
14331407 |
gatcagttagcgaatcttgtggaaaagtacactcttgcaaaccatctattttggggcttgtggggacttatttcagtaagcttttttcttttcactttta |
14331308 |
T |
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| Q |
301 |
tgattactctacatcttact |
320 |
Q |
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| T |
14331307 |
t-attactctacatcttact |
14331289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 320
Target Start/End: Complemental strand, 14424617 - 14424299
Alignment:
| Q |
1 |
agtttgaacttggaacttaaagaaatggagttcaaatatcctcaaaaagggttgaaaatggccacttcaaaaattatatgcatatttttcgaagttgctt |
100 |
Q |
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||||||| |||| ||||| ||||||||||||||||||||||| |||| ||||||||||||||||||||||| ||| |||||||||||||||||||||| |
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| T |
14424617 |
agtttgaccttgtaacttcaagaaatggagttcaaatatccttgaaaactgttgaaaatggccacttcaaaaaatatgtgcatatttttcgaagttgctt |
14424518 |
T |
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| Q |
101 |
attcactctttaatttaactaaaatttgatcacattcaagccttcaaaatgtttatttgtaaacttgtacacaggaaaaaagccaagtgatgctcaagtg |
200 |
Q |
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| T |
14424517 |
atgcactctttaatttaactaaaattagatcacattcaagccttcaaaatgtttatttgtaaacttgtacacaggagaaaagccaagtggtgctcaagtg |
14424418 |
T |
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| Q |
201 |
gatcagttagcgaatcttgtggaaaagtacactcttgcaaaccatctattttggggcttgtggggacttatttcagtaagcttttttcttttcactttta |
300 |
Q |
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| T |
14424417 |
gatcagttagcgaatcttgtggaaaagtacactcttgcaaaccatctattttggggcttgtggggacttatttcagtaagcttttttcttttcactttta |
14424318 |
T |
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| Q |
301 |
tgattactctacatcttact |
320 |
Q |
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| |||||||||||||||||| |
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| T |
14424317 |
t-attactctacatcttact |
14424299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 222 - 287
Target Start/End: Complemental strand, 44102852 - 44102787
Alignment:
| Q |
222 |
gaaaagtacactcttgcaaaccatctattttggggcttgtggggacttatttcagtaagctttttt |
287 |
Q |
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||||| || ||||| |||||||||||||| |||||||| |||||||||||||| ||||||| |||| |
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| T |
44102852 |
gaaaaatatactctcgcaaaccatctattctggggcttatggggacttatttcggtaagctctttt |
44102787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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