View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11378_low_7 (Length: 334)
Name: NF11378_low_7
Description: NF11378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11378_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 10 - 319
Target Start/End: Original strand, 35108853 - 35109162
Alignment:
| Q |
10 |
agtgagatgaaccaatttatcaaataatcaggaagtgtaaaattactgtgaagaaatctatgttagaaagattatgtatctcaggataatcactttcatt |
109 |
Q |
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| T |
35108853 |
agtgtgatgaaccaatttatcaaataatcaggaagtgtaaaattactgtgaagaaatctatgttagaaagattatgtatctcaggataatcactttcatt |
35108952 |
T |
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| Q |
110 |
gtttttcttgattgttttctctgtagtgggatccagaagcagatatctactagtccccctgttagaaagcttgtcgcattaacgctcataagagtcagct |
209 |
Q |
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| T |
35108953 |
gtttttcttgattgttttctctgtagtgggatccagaagcagatatctactagtccccctgttagaaagcttgtcgcattaacgttcataagagtcagct |
35109052 |
T |
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| Q |
210 |
tagcatacatggaatataaacgtatttctgaggtaactttggtcgcgagctctttctgtatgatctttgaagagtttagaacgattcataaacttccccc |
309 |
Q |
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| T |
35109053 |
tagcatacatggaatataaacgtatttatgaggtaactttggtcgcgagctctttctgtatgatctttgaagagtttagaacgattcataaacttccccc |
35109152 |
T |
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| Q |
310 |
ctctattttt |
319 |
Q |
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|||||||||| |
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| T |
35109153 |
ctctattttt |
35109162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 104 - 243
Target Start/End: Complemental strand, 38132926 - 38132791
Alignment:
| Q |
104 |
ttcattgtttttcttgattgttttctctgtagtgggatccagaagcagatatctactagtccccctgttagaaagcttgtcgcattaacgctcataagag |
203 |
Q |
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| T |
38132926 |
ttcattgtttttcttgattc----ctctgtagtgggatccagaggcagatttctacgagctcccttgttagaaagcttgttgcactgacattcatcaggg |
38132831 |
T |
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| Q |
204 |
tcagcttagcatacatggaatataaacgtatttctgaggt |
243 |
Q |
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| T |
38132830 |
tcagcttagggtacatggaatgtaagcggatttatgaggt |
38132791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 128 - 222
Target Start/End: Complemental strand, 38120901 - 38120807
Alignment:
| Q |
128 |
ctctgtagtgggatccagaagcagatatctactagtccccctgttagaaagcttgtcgcattaacgctcataagagtcagcttagcatacatgga |
222 |
Q |
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||||||||||||||| ||||||||||||||| || | | |||||||||||||||||| | || ||||||| |||||||||| ||||||||| |
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| T |
38120901 |
ctctgtagtgggatcatgaagcagatatctacaagctcacttgttagaaagcttgtcgctctcacattcataagggtcagcttaggatacatgga |
38120807 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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