View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11378_low_8 (Length: 315)
Name: NF11378_low_8
Description: NF11378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11378_low_8 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 133; Significance: 4e-69; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 15 - 175
Target Start/End: Complemental strand, 29654585 - 29654425
Alignment:
| Q |
15 |
gaacccatctatcaagtttacggacatatgcaacatagtgaccagtatccattgatgatctaacgtgactaacaaatcccagtagttggtatcttgagga |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| ||||||||||||||||| |||| |||||| |
|
|
| T |
29654585 |
gaacccatctatcaagtttacggacatatgcaatatagtgaccagtatccattgatgatccaacgtgactgacaaatcccagtagttgatatcctgagga |
29654486 |
T |
|
| Q |
115 |
aagccaaaacgagaaaaattcattaaaccacgtgtcaaagtaataaatccaaaatatgatc |
175 |
Q |
| |
|
||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
29654485 |
aagccaaaaagagaaaaattcattaaaccacatgtcaaagtaataaatccaaaatatgatc |
29654425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 241 - 315
Target Start/End: Complemental strand, 29654359 - 29654285
Alignment:
| Q |
241 |
caggagcaacaacaatcacaagatgagaaacttcaatgtacaaatacaaactagcaatagctagcctccaaaatc |
315 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
29654359 |
caggagcaacaacaatcacaaaatgagaaacttcaatgtacagatacaaactagcaatagctagcctccaaaatc |
29654285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University