View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11378_low_9 (Length: 305)

Name: NF11378_low_9

Description: NF11378

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF11378_low_9

[»] chr8 (5 HSPs)

Alignment Details

Target: chr8 (Bit Score: 268; Significance: 1e-149; HSPs: 5)

Name: chr8

Description:

Target: chr8; HSP #1

Raw Score: 268; E-Value: 1e-149

Query Start/End: Original strand, 1 - 305

Target Start/End: Complemental strand, 14689042 - 14688738

Alignment:

Q	1	cttgtttttgtcattgaaataaattttcttgtatgcgtgtggtgggtcaaattttgcttttgtattttggaattttcttgcttggcatatcttatgcttt	100	Q
		\|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	14689042	cttgtttctatcattgaaataaattttcttgtatgggtgtggtgggtcaaattttgcttttgtattttggaattttcttgcttggcatatcttatgcttt	14688943	T

Q	101	agtgtttcctacatctttaattaacatattacataacctttctaggttatagtactgtttgttcctactgtatgagggannnnnnnagatggtttggcaa	200	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	14688942	agtgtttcctacatctttaattaacatattacataacctttctaggttatagtactgtttgttcctactctatgagggatttttttagatggtttggcaa	14688843	T

Q	201	gtctagcaaatttttgtttggaaattataggaacttcattgcaatgtgttggagcataattcttcattggaatgatatactgccactatataaagccgta	300	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	14688842	gtctagcaaatttttgtttggaaattataggaacttcattgcaatgtgttggagcataattcttcattggaatgatatactgccactatataaagccgta	14688743	T

Q	301	gaact	305	Q
		\|\|\|\|\|
T	14688742	gaact	14688738	T

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Target: chr8; HSP #2

Raw Score: 45; E-Value: 1e-16

Query Start/End: Original strand, 225 - 305

Target Start/End: Original strand, 14669037 - 14669117

Alignment:

Q	225	ttataggaacttcattgcaat--gtgttggagcataattcttcattggaatgatatactgccactatataaagccgtagaact	305	Q
		\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|
T	14669037	ttatagggacttcattgcaatatgtgttggagcattattcttcattggaatg--atactgccactatataaagctatagaact	14669117	T

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Target: chr8; HSP #3

Raw Score: 45; E-Value: 1e-16

Query Start/End: Original strand, 225 - 305

Target Start/End: Complemental strand, 14672194 - 14672114

Alignment:

Q	225	ttataggaacttcattgcaat--gtgttggagcataattcttcattggaatgatatactgccactatataaagccgtagaact	305	Q
		\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|
T	14672194	ttatagggacttcattgcaatatgtgttggagcattattcttcattggaatg--atactgccactatataaagctatagaact	14672114	T

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Target: chr8; HSP #4

Raw Score: 40; E-Value: 0.0000000000001

Query Start/End: Original strand, 225 - 296

Target Start/End: Original strand, 14661088 - 14661159

Alignment:

Q	225	ttataggaacttcattgcaatgtgt--tggagcataattcttcattggaatgatatactgccactatataaagc	296	Q
		\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\| \|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	14661088	ttatagggacttcattgcaatatgtattggagcattattcttcattggaatg--atactgccactatataaagc	14661159	T

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Target: chr8; HSP #5

Raw Score: 37; E-Value: 0.000000000007

Query Start/End: Original strand, 225 - 305

Target Start/End: Complemental strand, 14644277 - 14644197

Alignment:

Q	225	ttataggaacttcattgcaat--gtgttggagcataattcttcattggaatgatatactgccactatataaagccgtagaact	305	Q
		\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|
T	14644277	ttatagggacttcattgcaatatgtgttgaagcattattcttcattgaaatg--atactgccactatataaagctatagaact	14644197	T

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