View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11379_high_1 (Length: 918)
Name: NF11379_high_1
Description: NF11379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11379_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 649; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 649; E-Value: 0
Query Start/End: Original strand, 183 - 911
Target Start/End: Complemental strand, 55270403 - 55269675
Alignment:
| Q |
183 |
atttcctgtctgcgaagagtcaagattagtacttgtactatttgatagcttttgcttgtatgtacaaaatagaatcagagaattgtatttgatgagttat |
282 |
Q |
| |
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||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55270403 |
atttcctgtgtgtgaagagtcaagattagtacttgtactatttgatagcttttggttgtatgtacaaaatagaatcagagaattgtatttgatgagttat |
55270304 |
T |
|
| Q |
283 |
gtatgatttaattatgcattatttaaaccaaatgtggtttattaaccgatgctat----gttcttatggatcatatttacataggctttgggcttgaagg |
378 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
55270303 |
g----atttaattatgcattatttaaaccaaatgtggtttattaaccgatgctatatatgttcttatggatcatatttacataggctttgggcttgaagg |
55270208 |
T |
|
| Q |
379 |
tagtgaggaaggttgataatcctgagaacaaggtgatgtttcctcatgcctttttctttgcaatgtgactgacattctaatcagaaagcatagattatac |
478 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55270207 |
tggtgaggaaggttgataatcctgagaacaaggtgatgtttcctcatgcctttttctttgcaatgtgactgacattctaatcagaaagcatagattatac |
55270108 |
T |
|
| Q |
479 |
aactacaattaatagaaacacatgtttt----tgttgcatgtcctacagtacactattgctatacttgggtataaagaggaggacgacgcaactgtgttg |
574 |
Q |
| |
|
||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
55270107 |
aactacaat----agaaacacatgttttaatttgttgcatgtcctacagtacactattgctatacttgggtataaagaggaggacgacgcaactgtgttg |
55270012 |
T |
|
| Q |
575 |
gagttgacatataattatggtgtcaccgaatactctaagggaactgcttatgcacaggttagttcataagttaaattatttgaccttgaagcttaaacta |
674 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
55270011 |
gagttgacatataattatggtgtcaccgaatactctaagggaactgcttatgcacaggttagttcataagttaaattatatgaccttgaagcttaaacta |
55269912 |
T |
|
| Q |
675 |
gctttctgcgcagctctgtcctgttaatggtaaaatatgtttcatgtgtctatgacagattgctgttggtactgatgatgtctacaagagtgctgatgta |
774 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
55269911 |
gctttctgcgcagctctgtcctgttaatggtaaaatatgtttcatgtgtctatgacagattgctgttggtactgatgatgtctacaagagtgctgatgta |
55269812 |
T |
|
| Q |
775 |
gtcaacctagtaacgcaagagcttggagggaagatcactcggcaaccagggccaattcccggccttaacacaaaagtcgtttcttttttagatccagatg |
874 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
55269811 |
gtcaacctagtaacgcaagagcttggagggaagatcactcggcaaccagggccaattcccggccttaacacaaaagtcgtttcttttttagatccagatg |
55269712 |
T |
|
| Q |
875 |
gatggaaaactgtaagttcatttttccctttgcttct |
911 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
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|
| T |
55269711 |
gatggaaaactgtaagttcatttttccctttgcttct |
55269675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 546; E-Value: 0
Query Start/End: Original strand, 183 - 892
Target Start/End: Complemental strand, 55263539 - 55262830
Alignment:
| Q |
183 |
atttcctgtctgcgaagagtcaagattagtacttgtactatttgatagcttttgcttgtatgtacaaaatagaatcagagaattgtatttgatgagttat |
282 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
55263539 |
atttcctgtgtgcgaagagtcaagattagtacttgtactatttgatagcttttggttgtatgtacaaaatagaatcagagaattgtatttgatgagttat |
55263440 |
T |
|
| Q |
283 |
gtatgatttaattatgcattatttaaaccaaatgtggtttattaaccgatgctat----gttcttatggatcatatttacataggctttgggcttgaagg |
378 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
55263439 |
g----atttaattatgcattatttaaaccaaatgtggtttattaaccgatgctatatatgttcttatggatcatatttacataggctttgggcttgaagg |
55263344 |
T |
|
| Q |
379 |
tagtgaggaaggttgataatcctgagaacaaggtgatgtttcctcatgcctttttctttgcaatgtgactgacattctaatcagaaagcatagattatac |
478 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
55263343 |
tggtgaggaaggttgataatcctgagaacaaggtgatgtttcctcatgcctttttctttgcaatgtgactgacattctaatcagaaagcatagattatac |
55263244 |
T |
|
| Q |
479 |
aactacaattaatagaaacacatgtttt----tgttgcatgtcctacagtacactattgctatacttgggtataaagaggaggacgacgcaactgtgttg |
574 |
Q |
| |
|
||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
55263243 |
aactacaat----agaaacacatgttttaatttgttgcatgtcctacagtacactattgctatacttgggtataaagaggaggacgacgcaactgtgttg |
55263148 |
T |
|
| Q |
575 |
gagttgacatataattatggtgtcaccgaatactctaagggaactgcttatgcacaggttagttcataagttaaattatttgaccttgaagcttaaacta |
674 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
55263147 |
gagttgacatataattatggtgtcaccgaatactctaagggaactgcttatgcacaggttagttcataagttaaattatatgaccttgaagcttaaacta |
55263048 |
T |
|
| Q |
675 |
gctttctgcgcagctctgtcctgttaatggtaaaatatgtttcatgtgtctatgacagattgctgttggtactgatgatgtctacaagagtgctgatgta |
774 |
Q |
| |
|
||||||| || | ||| | || ||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
55263047 |
gctttcttcgtgtttatgtaccattgatggtaaaatatgtttcatgtgtctataacagattgccattggtactgatgatgtctacaagagtgctgatgta |
55262948 |
T |
|
| Q |
775 |
gtcaacctagtaacgcaagagcttggagggaagatcactcggcaaccagggccaattcccggccttaacacaaaagtcgtttcttttttagatccagatg |
874 |
Q |
| |
|
||||||||||| || ||||||||||||||| ||||||||| |||||||||||||||||| |||||||||||||| ||| ||| |||||||||||||||| |
|
|
| T |
55262947 |
gtcaacctagtcacacaagagcttggaggggagatcactctgcaaccagggccaattcctggccttaacacaaaggtcacttcctttttagatccagatg |
55262848 |
T |
|
| Q |
875 |
gatggaaaactgtaagtt |
892 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
55262847 |
gatggaaaactgtaagtt |
55262830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 143; E-Value: 1e-74
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 55263711 - 55263569
Alignment:
| Q |
1 |
ttattgcctttgtgaaggatcctgatggctacacttttgcacttgtccaaagacctatagttcacgacccattctgtcaaataagtcttcgcgttggtga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
55263711 |
ttattgcctttgtgaaggatcctgatggctacacttttgcacttgtccaaagacctatagttcacgacccattctgtcaaataagtcttcgcgttggtga |
55263612 |
T |
|
| Q |
101 |
tttagaacgtgccataaagttttatgaaaaggtaacaatcgaa |
143 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
55263611 |
tttagaacgtgccataaagttttatgaaaaggtaacaatcgaa |
55263569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 135; E-Value: 7e-70
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 55270575 - 55270433
Alignment:
| Q |
1 |
ttattgcctttgtgaaggatcctgatggctacacttttgcacttgtccaaagacctatagttcacgacccattctgtcaaataagtcttcgcgttggtga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
55270575 |
ttattgcctttgtgaaggatcctgatggctacacttttgcacttgttcaaagacctatagttcacgacccattctgtcaaataagtctccgcgttggtga |
55270476 |
T |
|
| Q |
101 |
tttagaacgtgccataaagttttatgaaaaggtaacaatcgaa |
143 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55270475 |
tttagaacgtgccataaagttttatgaaaaggtaacaatcgaa |
55270433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 69; Significance: 2e-30; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 720 - 892
Target Start/End: Complemental strand, 8301029 - 8300857
Alignment:
| Q |
720 |
gtgtctatgacagattgctgttggtactgatgatgtctacaagagtgctgatgtagtcaacctagtaacgcaagagcttggagggaagatcactcggcaa |
819 |
Q |
| |
|
|||| ||| |||| |||||||||| || |||||||| ||||||||||| || |||||||||||| || ||||| ||||||||||||| || ||||| |
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|
| T |
8301029 |
gtgtatataacaggttgctgttggcaccgatgatgtatacaagagtgccgagttagtcaacctagccactcaagaatttggagggaagattaccaggcaa |
8300930 |
T |
|
| Q |
820 |
ccagggccaattcccggccttaacacaaaagtcgtttcttttttagatccagatggatggaaaactgtaagtt |
892 |
Q |
| |
|
||||||||||| || ||||| |||||||| || |||||| |||||||||||||||||||||||||| |||| |
|
|
| T |
8300929 |
ccagggccaatccctggcctcaacacaaagatcacttctttcttagatccagatggatggaaaactgtgagtt |
8300857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 519 - 638
Target Start/End: Complemental strand, 8301226 - 8301107
Alignment:
| Q |
519 |
tacagtacactattgctatacttgggtataaagaggaggacgacgcaactgtgttggagttgacatataattatggtgtcaccgaatactctaagggaac |
618 |
Q |
| |
|
||||||||||| | ||||| |||||||| ||||||| |||| | | |||||||||| |||||||||| ||||||||||| |||||| | ||||||| |
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|
| T |
8301226 |
tacagtacactttagctatgcttgggtacgcagaggagcacgagaccattgtgttggagctgacatataactatggtgtcactgaatacaccaagggaaa |
8301127 |
T |
|
| Q |
619 |
tgcttatgcacaggttagtt |
638 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
8301126 |
tgcttatgcacaggttagtt |
8301107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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