View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11379_high_15 (Length: 534)
Name: NF11379_high_15
Description: NF11379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11379_high_15 |
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Alignment Details
Target: chr1 (Bit Score: 478; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 14 - 519
Target Start/End: Original strand, 28046338 - 28046843
Alignment:
| Q |
14 |
agaggaagatgaagaaccaattgaagaggaggtatatggcagatctctgctagggaagctttggactgataatgcttacaacgttagagcttttaagcaa |
113 |
Q |
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| T |
28046338 |
agaggaagatgaagaaccaattgaagaggaggtatatggcagatctctgctagggaagctttggactgataatgcttacaatgttagagcttttaagcaa |
28046437 |
T |
|
| Q |
114 |
acgattgtggaattctggaggctcaaaaatccagttgaaacacaagaacttggtaagaatctttaccttttccggttttgtaataaacgtgatatggaaa |
213 |
Q |
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| T |
28046438 |
acgattgtggaattctggaggctcaaaaatccagttgaaacacaagaacttggtaagaatctttaccttttccggttttgtaataaacgtgatctggaaa |
28046537 |
T |
|
| Q |
214 |
atgtgataaaaaatggaccttggagctttgatagaaatattctggtactgaagagggttacaggtactgaacaaccttctgaaatagaaatgaattcaat |
313 |
Q |
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| T |
28046538 |
atgtgataaaaaatggaccttggagctttgatagaaatattctggtattgaagagggttacaggtactgaacaaccttctgaaatagaaatgaattcaat |
28046637 |
T |
|
| Q |
314 |
gtcattttgggcaaggatttatgatttaccccttaagttaagattcgaatccatggcaaaaaagctcggtaatgtgatgggtcaatttgttgaagctgat |
413 |
Q |
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| T |
28046638 |
gtcattttgggcaaggatttatgatttaccccttaagttaagattcgaatccatggcaaaaaagctcggtaatgtgatgggtcaatttgttgaagctgat |
28046737 |
T |
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| Q |
414 |
gctaaagaaagccaccgtttgggtcgttttttgagaactaaagtcaccattaatctcacaaagccgctgaaaaggggaacgattatcaggtacaatggta |
513 |
Q |
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| T |
28046738 |
gttaaagaaagccaccgtctgggtcgttttttgagaactaaagtcaccattaatctcacaaagccgctgaaaaggggaacaattattaggtacaatggta |
28046837 |
T |
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| Q |
514 |
aagatt |
519 |
Q |
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|||||| |
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| T |
28046838 |
aagatt |
28046843 |
T |
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