View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11379_high_16 (Length: 518)
Name: NF11379_high_16
Description: NF11379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11379_high_16 |
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Alignment Details
Target: chr5 (Bit Score: 343; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 27 - 503
Target Start/End: Original strand, 39136169 - 39136645
Alignment:
| Q |
27 |
ttatgaacaaaatttcttgcgtttcctaagcaaaagttgtcattgtgctctcatgatcgtaggtgttttggtccatttcacaaaaatgctttgacaacaa |
126 |
Q |
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| T |
39136169 |
ttatgaacaaaatttcttgcatttcctaagcaaaagttgtcattgtgctctcatgatcgtaggtgttttggtccatttcacaaaaatgctttgacaacaa |
39136268 |
T |
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| Q |
127 |
ttagaatatgaaaaattagaataattacttacctaaattggcacaatttaatactacctactgtgattttagtcttcaaaattaattgttccaacacatt |
226 |
Q |
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| T |
39136269 |
ttagaatatgaaaaattagaataattacttacctaaattggcacaatttaatactacctactgtgattttagtcttcaaaattaattgttccaacacatt |
39136368 |
T |
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| Q |
227 |
tttacctcatccgtacnnnnnnncctttttaaggtactaaaagtaaatacacattaattgannnnnnnnncaacctcttttcaataatctttctcggact |
326 |
Q |
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| T |
39136369 |
tttacctcatccgtacaaaaaaacctttttaaggtactaaaagtaaatacacattaattga-ttttttttcaacctcttttcaataatctttctcggact |
39136467 |
T |
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| Q |
327 |
tggttactaaataagtatggttcaattttgtc-nnnnnnnnnngtatggttcgaagagctttaagctgcgaacannnnnnnnnnnnaccatggactttaa |
425 |
Q |
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| T |
39136468 |
tggttactaaataagtatggttcaattttgtcaaaaaaaaaaagtatggttcaaagagctttaagctgcgaacatttttattttttaccatggactttaa |
39136567 |
T |
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| Q |
426 |
tcccaaatcatgagcaaagatttaatgagtaacattatgtaaagcataataatggtatgaggtgcttgccttgttcat |
503 |
Q |
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| T |
39136568 |
tcccaaatcatgagcaaagatttaatgagtaacattatgtaaagcataataatggtatgaggtgcttgccttgttcat |
39136645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 22 - 126
Target Start/End: Complemental strand, 39013577 - 39013472
Alignment:
| Q |
22 |
ttctattatgaacaaaatttcttgcgtttcctaagcaaaagttgtcattgtgctctcatgatcgtaggtg--ttttggtccatttcacaaaaatgctttg |
119 |
Q |
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|||||||||||| ||||| |||||| |||||||| |||||||| |||||| |||||||||||||||| | ||||||||||||||| ||||||||||| |
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| T |
39013577 |
ttctattatgaataaaatctcttgcatttcctaatcaaaagtttccattgttctctcatgatcgtaggaggtgtttggtccatttcac-aaaatgctttg |
39013479 |
T |
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| Q |
120 |
acaacaa |
126 |
Q |
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||||||| |
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| T |
39013478 |
acaacaa |
39013472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 18 - 110
Target Start/End: Original strand, 39134515 - 39134608
Alignment:
| Q |
18 |
atatttctattatgaacaaaatttcttgcgtttcctaagcaaaagttgtcattgtgctctc---atgatcgtaggtgttttggtccatttcacaaa |
110 |
Q |
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| T |
39134515 |
atatttctattatgaacaaaatttc-tgcatttcctaagtaaaagttttcattgtactctcatgatgatcgtatgtg-tttggtccatttcacaaa |
39134608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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