View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11379_high_18 (Length: 485)
Name: NF11379_high_18
Description: NF11379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11379_high_18 |
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| [»] scaffold0329 (1 HSPs) |
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| [»] scaffold0065 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 316; Significance: 1e-178; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 19 - 353
Target Start/End: Complemental strand, 35127889 - 35127557
Alignment:
| Q |
19 |
atagtgatcataggtgtttgaaggactttatctaacaacctagcatctaagaccaatccctcttttacatgcatgtcatcatggtcttttctagatggtt |
118 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35127889 |
atagtgatgataggtgtttgaaggactttatctaacaacctagcatctaagaccaatccctcttttacatgcatgtcatcatggtcttttctagatggtt |
35127790 |
T |
|
| Q |
119 |
ttaaaatttgtaggatgtagctcctgacctcccctgccccaacaataacacaaaccaaaccatcatgatgatgacatgtgtgactcatgacatgaaaact |
218 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35127789 |
ttaaaatttgtacgatgtagctcctgacctcccctgccccaacaataacacaaaccaaaccatcatgatgatgacatgtgtgactcatgacatgaaaact |
35127690 |
T |
|
| Q |
219 |
cataaactttccaaacatacattgcgcaacaatcctcaaagactctttcaacaccataagcaaatcacaatcactcttgaaggcttttcgaaacgtactt |
318 |
Q |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35127689 |
c--aaactttccaaacatacattgcgcaacaatcctcaaagactctttcaacaccataagcaaatcacaatcactcttgaaggcttttcgaaacgtactt |
35127592 |
T |
|
| Q |
319 |
ttcctttcgtcagtacataggtgtagcaccttaag |
353 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |
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| T |
35127591 |
ttcctttcgtcagtacataggtgtagcaccttaag |
35127557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 19 - 353
Target Start/End: Complemental strand, 35149892 - 35149560
Alignment:
| Q |
19 |
atagtgatcataggtgtttgaaggactttatctaacaacctagcatctaagaccaatccctcttttacatgcatgtcatcatggtcttttctaga--tgg |
116 |
Q |
| |
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|||||||| ||||||||||||||||| || ||||||||||||| |||||| | |||||||| ||||||| ||||||||||| |||||||| | | |
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| T |
35149892 |
atagtgatgataggtgtttgaaggacattctctaacaacctagtatctaaaatcaatcccttttttacacgcatgtcatcagggtctttttaatccctat |
35149793 |
T |
|
| Q |
117 |
ttttaaaatttgtaggatgtagctcctgacctcccctgccccaacaataacacaaaccaaaccatcatgatgatgacatgtgtgactcatgacatgaaaa |
216 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||| || ||| ||||| ||| | ||||||| |||||||||||| || ||||||| |||||||| |
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| T |
35149792 |
ttttaaaatatgtaggatgtagctcctgacctcccttgtccc-----taacatgaactagaccatcaggatgatgacatgcgttactcatggcatgaaaa |
35149698 |
T |
|
| Q |
217 |
ctcataaactttccaaacatacattgcgcaacaatcctcaaagactctttcaacaccataagc-aaatcacaatcactcttgaaggcttttcgaaacgta |
315 |
Q |
| |
|
|||||| | ||||||||||| ||||||||||| ||| |||||||||| | ||||||||||| | ||| ||| ||||||||| | || |||||| ||| || |
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| T |
35149697 |
ctcatacattttccaaacattcattgcgcaaccatcttcaaagactcctccaacaccataaacaaaaacacgatcactcttaagggattttcgtaacata |
35149598 |
T |
|
| Q |
316 |
cttttcctttcgtcagtacataggtgtagcaccttaag |
353 |
Q |
| |
|
|||||||||| |||| |||||||||||||| ||||||| |
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| T |
35149597 |
cttttccttttgtcaatacataggtgtagcgccttaag |
35149560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 360 - 392
Target Start/End: Complemental strand, 12700786 - 12700754
Alignment:
| Q |
360 |
cgttcctagcattttaggagccttaggcataaa |
392 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
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| T |
12700786 |
cgttcctagcattttaggagccttaggcataaa |
12700754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0329 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0329
Description:
Target: scaffold0329; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 200 - 242
Target Start/End: Complemental strand, 16580 - 16538
Alignment:
| Q |
200 |
gactcatgacatgaaaactcataaactttccaaacatacattg |
242 |
Q |
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||||||||||||||||||||||| || |||||||||| ||||| |
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| T |
16580 |
gactcatgacatgaaaactcatacacattccaaacatccattg |
16538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 353 - 399
Target Start/End: Original strand, 56366418 - 56366464
Alignment:
| Q |
353 |
gcagagccgttcctagcattttaggagccttaggcataaagtgaaaa |
399 |
Q |
| |
|
|||| |||||||||||||||||||| |||||||||||| | |||||| |
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| T |
56366418 |
gcagggccgttcctagcattttaggggccttaggcatagaatgaaaa |
56366464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 358 - 399
Target Start/End: Original strand, 37548319 - 37548360
Alignment:
| Q |
358 |
gccgttcctagcattttaggagccttaggcataaagtgaaaa |
399 |
Q |
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|||||||||||||||||||| |||||||||||| | |||||| |
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| T |
37548319 |
gccgttcctagcattttaggggccttaggcatagaatgaaaa |
37548360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 353 - 405
Target Start/End: Original strand, 10015276 - 10015328
Alignment:
| Q |
353 |
gcagagccgttcctagcattttaggagccttaggcataaagtgaaaatggacc |
405 |
Q |
| |
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|||| |||||||||| ||||||||| |||||||||||| | |||||| ||||| |
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| T |
10015276 |
gcagggccgttcctaacattttaggggccttaggcatagaatgaaaaaggacc |
10015328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 358 - 390
Target Start/End: Original strand, 30081987 - 30082019
Alignment:
| Q |
358 |
gccgttcctagcattttaggagccttaggcata |
390 |
Q |
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|||||||||||||||||||| |||||||||||| |
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| T |
30081987 |
gccgttcctagcattttaggggccttaggcata |
30082019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0065 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0065
Description:
Target: scaffold0065; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 358 - 390
Target Start/End: Complemental strand, 66875 - 66843
Alignment:
| Q |
358 |
gccgttcctagcattttaggagccttaggcata |
390 |
Q |
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|||||||||||||||||||| |||||||||||| |
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| T |
66875 |
gccgttcctagcattttaggggccttaggcata |
66843 |
T |
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