View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11379_high_21 (Length: 469)
Name: NF11379_high_21
Description: NF11379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11379_high_21 |
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Alignment Details
Target: chr2 (Bit Score: 359; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 17 - 455
Target Start/End: Original strand, 824225 - 824680
Alignment:
| Q |
17 |
caaaaccctaaccaacagcagcagcagcgcagatggatactatcagcagtttacctgacgatatcctctgccgcattctctcttttgttcccaccaaaaa |
116 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
824225 |
caaaaccctaaccaacagcagtagcagcgcagatggatactatcagcaatttacctgacgatatcctctgccacattctctcttttgttcccaccaaaaa |
824324 |
T |
|
| Q |
117 |
accagttgcaacaagtgttttgtccaagagatggactcatctatggcactatgttcccaatctccacaaacttagacttacccaaattgacaagagcata |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
824325 |
accagttgcaacaagtgttttgtccaagagatggactcatctatggcactatgttcccaatctccacaaacttagacttacccaaattgacaagagcata |
824424 |
T |
|
| Q |
217 |
tatgaatcaatgttcatgctcttattttatgtggaaagcattttctacatcagtgtctctccgcatagataaatccacattgtacccaacacattatgaa |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
824425 |
tatgaatcaatgttcatgctcttattttatgtggaaagcattttctacatcagtgtctctccgcatagataaatccacattgtacccaacacattataaa |
824524 |
T |
|
| Q |
317 |
tagtatgcatgttatctcgatatatgttgaattaacttttcatatcgaagaccttt-----------------tcggtgtttaatacgttgggacatgtg |
399 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
824525 |
tagtatgcatgttacctcgatatatgttgaattaacttttcatatcgaagaccttttcggtgtttcatacatgtcggtgtttaatacgttgggacatgtg |
824624 |
T |
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| Q |
400 |
attacatttgataattctgttttctctnnnnnnnttaccaatatctgtgttaacaa |
455 |
Q |
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| T |
824625 |
attacatttgataattctgttttctctaaaaaaattaccaatatctgtgttaacaa |
824680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 58 - 177
Target Start/End: Complemental strand, 990989 - 990870
Alignment:
| Q |
58 |
atcagcagtttacctgacgatatcctctgccgcattctctcttttgttcccaccaaaaaaccagttgcaacaagtgttttgtccaagagatggactcatc |
157 |
Q |
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| T |
990989 |
atcagcagtttgcccgacgaaatccttttccgcattctctcatttgtatccacaaaagaagcagttgctacaagcgttttgtccaagaggtggactaatc |
990890 |
T |
|
| Q |
158 |
tatggcactatgttcccaat |
177 |
Q |
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| T |
990889 |
tctggcattatcttcccaat |
990870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 90 - 179
Target Start/End: Complemental strand, 1013181 - 1013092
Alignment:
| Q |
90 |
cattctctcttttgttcccaccaaaaaaccagttgcaacaagtgttttgtccaagagatggactcatctatggcactatgttcccaatct |
179 |
Q |
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| T |
1013181 |
cattctctcttttctcacaaccaaagaatcagttgcaacaagcattctatcaaagagatggattcacctatggcatcatgttcccaatct |
1013092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 61 - 163
Target Start/End: Original strand, 35766297 - 35766399
Alignment:
| Q |
61 |
agcagtttacctgacgatatcctctgccgcattctctcttttgttcccaccaaaaaaccagttgcaacaagtgttttgtccaagagatggactcatctat |
160 |
Q |
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||||||||||| |||||| | || |||| ||||||||||||||| ||||| || | | ||||| ||||| |||||||||||||||||||||||||| | |
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| T |
35766297 |
agcagtttaccagacgatgttctttgccacattctctcttttgtctccacccaagaggccgttgccacaagcgttttgtccaagagatggactcatcttt |
35766396 |
T |
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| Q |
161 |
ggc |
163 |
Q |
| |
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||| |
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|
| T |
35766397 |
ggc |
35766399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 89 - 173
Target Start/End: Original strand, 22054516 - 22054600
Alignment:
| Q |
89 |
gcattctctcttttgttcccaccaaaaaaccagttgcaacaagtgttttgtccaagagatggactcatctatggcactatgttcc |
173 |
Q |
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||||||||||||| || | |||||| | || |||| |||||| |||||||||| ||||||||||||||||| |||| |||||| |
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| T |
22054516 |
gcattctctctttacttacaaccaaagaggcatttgccacaagtattttgtccaaaagatggactcatctatgtcactttgttcc |
22054600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 109 - 180
Target Start/End: Original strand, 40639890 - 40639961
Alignment:
| Q |
109 |
accaaaaaaccagttgcaacaagtgttttgtccaagagatggactcatctatggcactatgttcccaatctc |
180 |
Q |
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|||||| || ||||||||||||| || | || |||||||||| ||||||||||||| ||||||| |||||| |
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| T |
40639890 |
accaaagaatcagttgcaacaagcattctttcaaagagatggattcatctatggcaccatgttcctaatctc |
40639961 |
T |
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