View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11379_high_23 (Length: 445)
Name: NF11379_high_23
Description: NF11379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11379_high_23 |
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Alignment Details
Target: chr5 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 17 - 433
Target Start/End: Complemental strand, 32473132 - 32472716
Alignment:
| Q |
17 |
aaaaccaacccaagcaaacaactctccactcacccctctcaccatcttagaaagaacatcaacaatctaccccaacacaccttccatcatctacaacgac |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
32473132 |
aaaaccaacccaagcaaacaactctccactcacccctctcaccttcttagaaagaacttcaacaatctaccccaacacaccttccatcatctacaacgac |
32473033 |
T |
|
| Q |
117 |
accgttttcacatggtctcaaacccacaaacgatgcctccaacttgcctccgccatcacctccttaggtatccgccgcggcaacgtcgtctccgtcatcg |
216 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32473032 |
accgttttcacatggtctcaaacccacaaacgatgcctccaacttgcctccgccatcacctccttaggtatccgccgcggcaacgtcgtctccgtcatcg |
32472933 |
T |
|
| Q |
217 |
ctcccaacatccccgccatgtatgaactccacttcgccgttcccttcaccggagctatccttaacaacatcaacacgcgccttgacgcgcgtatcatctc |
316 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32472932 |
ctcccaacatccccgccatgtatgaactccacttcgccgtccccttcaccggagctatccttaacaacatcaacacgcgccttgacgcgcgtatcatctc |
32472833 |
T |
|
| Q |
317 |
caacatcctcctccactgcgaatccaaactcgttttcgtagatatcgccgcacgtgatcttgttctccaagctttatccttattcccttcaaaacaacat |
416 |
Q |
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|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32472832 |
caacatcctcctccactgcgaatccaaactcgttttcgtggatatcgccgcacgtgatcttgttctccaagctttatccttattcccttcaaaacaacat |
32472733 |
T |
|
| Q |
417 |
aaacctctccttattct |
433 |
Q |
| |
|
||||||||||||||||| |
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| T |
32472732 |
aaacctctccttattct |
32472716 |
T |
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