View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11379_high_25 (Length: 427)
Name: NF11379_high_25
Description: NF11379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11379_high_25 |
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Alignment Details
Target: chr7 (Bit Score: 349; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 19 - 419
Target Start/End: Complemental strand, 45271648 - 45271248
Alignment:
| Q |
19 |
ccaagatggctcttgatgactgcaaggacttgatgcaattcgctttggacagtcttgacctctccaacaactgtgttcgtgacaacaacattcaagctgt |
118 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
45271648 |
ccaagatggctcttgatgactgcaaagacttgatgcaattcgctttggacagtcttgacctctccaacaactgtgttcgtgacaacaacattgaagctgt |
45271549 |
T |
|
| Q |
119 |
tcatgaccaaactgctgatatgaggaattggttgagtgcagttatctcttacaaacaaggttgtatggaaggatttgacgatgcaaatgatggtgagaag |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45271548 |
tcatgaccaaactgctgatatgaggaattggttgagtgcagttatctcttacaaacaaggttgtatggaaggatttgacgatgcaaatgatggtgagaag |
45271449 |
T |
|
| Q |
219 |
aaaatcaaagagcaattccatgttcagagtttggacagcgtacaaaaggtcaccgcggttgcccttgacattgtgactggtttgtccgacatcctccagc |
318 |
Q |
| |
|
|| ||||| |||||||||||||||||||||||| ||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
45271448 |
aagatcaaggagcaattccatgttcagagtttgtacagcgtacaaaaggtcacagccgttgcccttgacattgtgactggtttgtctgacatcctccagc |
45271349 |
T |
|
| Q |
319 |
aattcaacttgaagtttgatatcaaacctctttcccgtcgtcttcttaattctgaggtgactgttgatgatcaaggacacccttcatggatctctgcttc |
418 |
Q |
| |
|
||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| |||| |
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|
| T |
45271348 |
aattcaacttgaactttgatatcaaacctccttcccgtcgtcttcttaattctgaggtgactgttgacgatcaaggatacccttcatggatctcttcttc |
45271249 |
T |
|
| Q |
419 |
t |
419 |
Q |
| |
|
| |
|
|
| T |
45271248 |
t |
45271248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 19 - 419
Target Start/End: Complemental strand, 45275181 - 45274781
Alignment:
| Q |
19 |
ccaagatggctcttgatgactgcaaggacttgatgcaattcgctttggacagtcttgacctctccaacaactgtgttcgtgacaacaacattcaagctgt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| || |||||||||||||||||||||| |
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|
| T |
45275181 |
ccaagatggctcttgatgactgcaaggacttgatgcaattcgctttggacagtcttgacctctcaaacaattgtcttagtgacaacaacattcaagctgt |
45275082 |
T |
|
| Q |
119 |
tcatgaccaaactgctgatatgaggaattggttgagtgcagttatctcttacaaacaaggttgtatggaaggatttgacgatgcaaatgatggtgagaag |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| || || |||| ||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45275081 |
tcatgaccaaactgctgatatgaggaattggttgagtgcagtcatatcctacagacaagcctgtatggaaggatttgacgatgcaaatgatggtgagaag |
45274982 |
T |
|
| Q |
219 |
aaaatcaaagagcaattccatgttcagagtttggacagcgtacaaaaggtcaccgcggttgcccttgacattgtgactggtttgtccgacatcctccagc |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45274981 |
aaaatcaaagagcaattccatgttcagagtttggacagcgtacaaaagatcaccgcggttgcccttgacattgtgactggtttgtccgacatcctccagc |
45274882 |
T |
|
| Q |
319 |
aattcaacttgaagtttgatatcaaacctctttcccgtcgtcttcttaattctgaggtgactgttgatgatcaaggacacccttcatggatctctgcttc |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| |
|
|
| T |
45274881 |
aattcaacttgaagtttgatatcaaacctctttcccgtcgtcttcttaattctgaggtgactgttgacgatcaaggatacccttcatggatctctgcttc |
45274782 |
T |
|
| Q |
419 |
t |
419 |
Q |
| |
|
| |
|
|
| T |
45274781 |
t |
45274781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 19 - 419
Target Start/End: Complemental strand, 45283422 - 45283022
Alignment:
| Q |
19 |
ccaagatggctcttgatgactgcaaggacttgatgcaattcgctttggacagtcttgacctctccaacaactgtgttcgtgacaacaacattcaagctgt |
118 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||||||| |
|
|
| T |
45283422 |
ccaagatggctcttaatgactgcaaggacttgatgcaattcgctttggacagtcttgacctctccaccaagtgtgttcatgacaacaacattcaagctgt |
45283323 |
T |
|
| Q |
119 |
tcatgaccaaactgctgatatgaggaattggttgagtgcagttatctcttacaaacaaggttgtatggaaggatttgacgatgcaaatgatggtgagaag |
218 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45283322 |
tcatgaccaaatcgctgatatgaggaattggttgagtgcggttatctcttacagacaagcttgtatggaaggatttgacgatgcaaatgatggtgagaag |
45283223 |
T |
|
| Q |
219 |
aaaatcaaagagcaattccatgttcagagtttggacagcgtacaaaaggtcaccgcggttgcccttgacattgtgactggtttgtccgacatcctccagc |
318 |
Q |
| |
|
|| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45283222 |
aagatcaaggagcaattccatgttcagagtttggacagcgtacaaaaggttaccgctgttgcccttgacattgtgactggtttgtccgacatcctccagc |
45283123 |
T |
|
| Q |
319 |
aattcaacttgaagtttgatatcaaacctctttcccgtcgtcttcttaattctgaggtgactgttgatgatcaaggacacccttcatggatctctgcttc |
418 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| |||| |
|
|
| T |
45283122 |
aattcaacttgaagtttgatgtcaaacctgcttcccgtcgtcttcttaattctgaggtgactgttgacgatcaaggatacccttcatggatctcttcttc |
45283023 |
T |
|
| Q |
419 |
t |
419 |
Q |
| |
|
| |
|
|
| T |
45283022 |
t |
45283022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 18 - 419
Target Start/End: Complemental strand, 45294811 - 45294410
Alignment:
| Q |
18 |
accaagatggctcttgatgactgcaaggacttgatgcaattcgctttggacagtcttgacctctccaacaactgtgttcgtgacaacaacattcaagctg |
117 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| ||||| |||||||||||||| |
|
|
| T |
45294811 |
accaagatggctcttaatgactgcaaggacttgatgcaattcgctttggacagtcttgacctctccaccaagtgtgttcatgacagcaacattcaagctg |
45294712 |
T |
|
| Q |
118 |
ttcatgaccaaactgctgatatgaggaattggttgagtgcagttatctcttacaaacaaggttgtatggaaggatttgacgatgcaaatgatggtgagaa |
217 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||| |||||||| |
|
|
| T |
45294711 |
ttcatgaccaaaccgctgatatgaggaattggttgagtgcagttatctcttacagacaagcttgtatggaaggatttgacgatgaaaatgacggtgagaa |
45294612 |
T |
|
| Q |
218 |
gaaaatcaaagagcaattccatgttcagagtttggacagcgtacaaaaggtcaccgcggttgcccttgacattgtgactggtttgtccgacatcctccag |
317 |
Q |
| |
|
||| ||||| |||||||| | ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45294611 |
gaagatcaaggagcaattagacgttcagagtttggacagcgtacaaaaggttaccgctgttgcccttgacattgtgactggtttgtccgacatcctccag |
45294512 |
T |
|
| Q |
318 |
caattcaacttgaagtttgatatcaaacctctttcccgtcgtcttcttaattctgaggtgactgttgatgatcaaggacacccttcatggatctctgctt |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
45294511 |
caattcaacttgaagtttgatatcaaacctgcttcccgtcgtcttcttaattctgaggtgactgttgatgatcaaggatacccttcatggatctctgctt |
45294412 |
T |
|
| Q |
418 |
ct |
419 |
Q |
| |
|
|| |
|
|
| T |
45294411 |
ct |
45294410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 18 - 419
Target Start/End: Complemental strand, 45303771 - 45303370
Alignment:
| Q |
18 |
accaagatggctcttgatgactgcaaggacttgatgcaattcgctttggacagtcttgacctctccaacaactgtgttcgtgacaacaacattcaagctg |
117 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| ||||| |||||||||||||| |
|
|
| T |
45303771 |
accaagatggctcttaatgactgcaaggacttgatgcaattcgctttggacagtcttgacctctccaccaagtgtgttcatgacagcaacattcaagctg |
45303672 |
T |
|
| Q |
118 |
ttcatgaccaaactgctgatatgaggaattggttgagtgcagttatctcttacaaacaaggttgtatggaaggatttgacgatgcaaatgatggtgagaa |
217 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||| |||||||| |
|
|
| T |
45303671 |
ttcatgaccaaaccgctgatatgaggaattggttgagtgcagttatctcttacagacaagcttgtatggaaggatttgacgatgaaaatgacggtgagaa |
45303572 |
T |
|
| Q |
218 |
gaaaatcaaagagcaattccatgttcagagtttggacagcgtacaaaaggtcaccgcggttgcccttgacattgtgactggtttgtccgacatcctccag |
317 |
Q |
| |
|
||| ||||| |||||||| | ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45303571 |
gaagatcaaggagcaattagacgttcagagtttggacagcgtacaaaaggttaccgctgttgcccttgacattgtgactggtttgtccgacatcctccag |
45303472 |
T |
|
| Q |
318 |
caattcaacttgaagtttgatatcaaacctctttcccgtcgtcttcttaattctgaggtgactgttgatgatcaaggacacccttcatggatctctgctt |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
45303471 |
caattcaacttgaagtttgatatcaaacctgcttcccgtcgtcttcttaattctgaggtgactgttgatgatcaaggatacccttcatggatctctgctt |
45303372 |
T |
|
| Q |
418 |
ct |
419 |
Q |
| |
|
|| |
|
|
| T |
45303371 |
ct |
45303370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 93 - 176
Target Start/End: Complemental strand, 38588727 - 38588644
Alignment:
| Q |
93 |
gttcgtgacaacaacattcaagctgttcatgaccaaactgctgatatgaggaattggttgagtgcagttatctcttacaaacaa |
176 |
Q |
| |
|
||||| || |||||||||||||| ||||||| ||||| ||||| | ||||||||||||||||| |||||||| ||| ||||| |
|
|
| T |
38588727 |
gttcgcgataacaacattcaagccattcatgatcaaacacctgattttaggaattggttgagtgctgttatctcataccaacaa |
38588644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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