View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11379_high_31 (Length: 402)

Name: NF11379_high_31
Description: NF11379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11379_high_31
NF11379_high_31
[»] chr1 (2 HSPs)
chr1 (1-385)||(41415163-41415546)
chr1 (156-245)||(41416957-41417042)
[»] scaffold0648 (3 HSPs)
scaffold0648 (259-385)||(501-624)
scaffold0648 (189-245)||(4789-4842)
scaffold0648 (81-117)||(279-315)
[»] scaffold0271 (3 HSPs)
scaffold0271 (259-385)||(14881-15004)
scaffold0271 (189-245)||(12826-12879)
scaffold0271 (81-117)||(14660-14696)
[»] scaffold0274 (3 HSPs)
scaffold0274 (189-245)||(1192-1246)
scaffold0274 (189-245)||(4259-4312)
scaffold0274 (189-245)||(22909-22962)


Alignment Details
Target: chr1 (Bit Score: 318; Significance: 1e-179; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 385
Target Start/End: Complemental strand, 41415546 - 41415163
Alignment:
Q  1 gacaattacaactgtaataataatttgagaaaatgtcataaatccattaaatcacatgtgttgctatgctatggcatgtagacacgccttccatcaaaag 100  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||    
T  41415546 gacaactacaactgtaataataatttgagaaaatgtcataaatccattaaatcacatgtgttgctatgctatggcatgtagacacgccttccat---aag 41415450  T
Q  101 tgttattcaaatgttaagtaagtagctgaatacaatcagtagtatactatactactatcataagaagaatttaaaccaaaatataaaaccataaatccgc 200  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41415449 tgttattcaaatgttaaataagtagctgaatacaatcagtagtatactatactactatcataagaagaatttaaaccaaaatataaaaccataaatccgc 41415350  T
Q  201 tgaaatttttataatttgaactaaataagcattctataattccaac--nnnnnnnnnnnntcatcattatcatgatcctataacaattcttattattatt 298  Q
    ||||||||||||||||||||||||||||||||||||||||||||||              ||||||||||||||||||||||||||||||||||||||||    
T  41415349 tgaaatttttataatttgaactaaataagcattctataattccaacaaaaacaaaaaaaatcatcattatcatgatcctataacaattcttattattatt 41415250  T
Q  299 tcaaagaattaccgattaatctcaaacattgaatccttcagcacgaagacaaattcgatgagcttcaatccacttggcacaagcatc 385  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41415249 tcaaagaattaccgattaatctcaaacattgaatccttcagcacgaagacaaattcgatgagcttcaatccacttggcacaagcatc 41415163  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 156 - 245
Target Start/End: Complemental strand, 41417042 - 41416957
Alignment:
Q  156 tatcataagaagaatttaaaccaaaatataaaaccataaatccgctgaaatttttataatttgaactaaataagcattctataattccaa 245  Q
    ||||||| |||||| || |||||| ||||||  |||||||||||||||||||||   ||||||||||||| || ||||||||||||||||    
T  41417042 tatcatacgaagaactttaaccaagatataag-ccataaatccgctgaaatttt---aatttgaactaaacaaccattctataattccaa 41416957  T

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Target: scaffold0648 (Bit Score: 97; Significance: 1e-47; HSPs: 3)
Name: scaffold0648
Description:

Target: scaffold0648; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 259 - 385
Target Start/End: Original strand, 501 - 624
Alignment:
Q  259 tcatcattatcatgatcctataacaattcttattattatttcaaagaattaccgattaatctcaaacattgaatccttcagcacgaagacaaattcgatg 358  Q
    ||||||||||||||||||||||||||||||||||||||| | ||||||||||| |||   |||||||||||||||| |||||||||||||||||||||||    
T  501 tcatcattatcatgatcctataacaattcttattattatcttaaagaattaccaatt---ctcaaacattgaatccctcagcacgaagacaaattcgatg 597  T
Q  359 agcttcaatccacttggcacaagcatc 385  Q
    |||||||||||||||||||||||||||    
T  598 agcttcaatccacttggcacaagcatc 624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0648; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 189 - 245
Target Start/End: Complemental strand, 4842 - 4789
Alignment:
Q  189 ccataaatccgctgaaatttttataatttgaactaaataagcattctataattccaa 245  Q
    |||||||||||||||||||||   ||||||||||||| || |||||||| |||||||    
T  4842 ccataaatccgctgaaatttt---aatttgaactaaacaaccattctatcattccaa 4789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0648; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 81 - 117
Target Start/End: Original strand, 279 - 315
Alignment:
Q  81 gacacgccttccatcaaaagtgttattcaaatgttaa 117  Q
    ||||||||||| ||||||||||||||||| |||||||    
T  279 gacacgccttctatcaaaagtgttattcagatgttaa 315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0271 (Bit Score: 97; Significance: 1e-47; HSPs: 3)
Name: scaffold0271
Description:

Target: scaffold0271; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 259 - 385
Target Start/End: Original strand, 14881 - 15004
Alignment:
Q  259 tcatcattatcatgatcctataacaattcttattattatttcaaagaattaccgattaatctcaaacattgaatccttcagcacgaagacaaattcgatg 358  Q
    ||||||||||||||||||||||||||||||||||||||| | ||||||||||| |||   |||||||||||||||| |||||||||||||||||||||||    
T  14881 tcatcattatcatgatcctataacaattcttattattatcttaaagaattaccaatt---ctcaaacattgaatccctcagcacgaagacaaattcgatg 14977  T
Q  359 agcttcaatccacttggcacaagcatc 385  Q
    |||||||||||||||||||||||||||    
T  14978 agcttcaatccacttggcacaagcatc 15004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0271; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 189 - 245
Target Start/End: Original strand, 12826 - 12879
Alignment:
Q  189 ccataaatccgctgaaatttttataatttgaactaaataagcattctataattccaa 245  Q
    |||||||||||||||||||||   ||||||||||||| || |||||||| |||||||    
T  12826 ccataaatccgctgaaatttt---aatttgaactaaacaaccattctatcattccaa 12879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0271; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 81 - 117
Target Start/End: Original strand, 14660 - 14696
Alignment:
Q  81 gacacgccttccatcaaaagtgttattcaaatgttaa 117  Q
    ||||||||||| ||||||||||||||||| |||||||    
T  14660 gacacgccttctatcaaaagtgttattcagatgttaa 14696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0274 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: scaffold0274
Description:

Target: scaffold0274; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 189 - 245
Target Start/End: Complemental strand, 1246 - 1192
Alignment:
Q  189 ccataaatccgctgaaatttttataatttgaactaaataagcattctataattccaa 245  Q
    |||||||||||||||||||||  |||||||||||||| || |||||||| |||||||    
T  1246 ccataaatccgctgaaatttt--taatttgaactaaacaaccattctatcattccaa 1192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0274; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 189 - 245
Target Start/End: Complemental strand, 4312 - 4259
Alignment:
Q  189 ccataaatccgctgaaatttttataatttgaactaaataagcattctataattccaa 245  Q
    |||||||||||||||||||||   ||||||||||||| || |||||||| |||||||    
T  4312 ccataaatccgctgaaatttt---aatttgaactaaacaaccattctatcattccaa 4259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0274; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 189 - 245
Target Start/End: Original strand, 22909 - 22962
Alignment:
Q  189 ccataaatccgctgaaatttttataatttgaactaaataagcattctataattccaa 245  Q
    |||||||||||||||||||||   ||||||||||||| || |||||||| |||||||    
T  22909 ccataaatccgctgaaatttt---aatttgaactaaacaaccattctatcattccaa 22962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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