View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11379_high_45 (Length: 352)
Name: NF11379_high_45
Description: NF11379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11379_high_45 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 122 - 334
Target Start/End: Original strand, 36970419 - 36970631
Alignment:
| Q |
122 |
tacagtgctttatatcaaagatagaagaaaggaaagccccttaattttaatttgcaagtaaattaattacctcacatacatccaacaaaattagaaatgt |
221 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36970419 |
tacagtgctttatatcaaagatagaagaaaggaaagcaccttaattttaatttgcaagtaaattaattacctcacatacatccaacaaaattagaaatgt |
36970518 |
T |
|
| Q |
222 |
tcttcttcattgattccatcttcagaaaaggaaaggaactacaaatgaactccaagattgatttgaaggagcaaaccctacttaaagatacgctagaaaa |
321 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
36970519 |
tcttcttcattgattccatcttcagaaaaggaaaggaactacatattaactccaagattgatttgaaggagcaaaccctacttaaagatactctagaaaa |
36970618 |
T |
|
| Q |
322 |
gcgtggattttat |
334 |
Q |
| |
|
|| |||||||||| |
|
|
| T |
36970619 |
gcatggattttat |
36970631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 11 - 96
Target Start/End: Original strand, 36970312 - 36970397
Alignment:
| Q |
11 |
cacagatctatatattaatgtttttatatcaatgatgtactatatcctgttcattcttaatagtttataccataagaagcacagaa |
96 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36970312 |
cacagatctatatattaatgtttttatatcaatgatgtactatatcctgttcattcttaatagtttataccataagaagcacagaa |
36970397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University