View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11379_high_53 (Length: 336)
Name: NF11379_high_53
Description: NF11379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11379_high_53 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 275; Significance: 1e-154; HSPs: 12)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 18 - 324
Target Start/End: Original strand, 3299004 - 3299310
Alignment:
| Q |
18 |
tcaatagcttatctgatgctacggatgttgtcaatcttatagtggacatacttccttccaaggttcagttgaatatgaatatgattcctcctcaagaaag |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |
|
|
| T |
3299004 |
tcaatagcttatctgatgctacggatgttgtcaatcttatagtggacatacttccttccaaggttcggttgaatatgaatatgattcctcctgaagaaag |
3299103 |
T |
|
| Q |
118 |
atgcattttttctgttgaaatcgtcccaatttgttgcggggatttgattattctgcctagtcatattgctgcttctttcggtccaaatattggtcctatt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3299104 |
atgcattttttctgttgaaatcgtcccaatttgttgcggggatttgattattctgcctagtcatattgctgcttctttcggtccaaatattggtcctatt |
3299203 |
T |
|
| Q |
218 |
gtcatttgtactagggttgccaaaacatttactttgcttgatccatttaccttgacccactgtttcttaaagtctgatcagtactggaatgcacccttca |
317 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |||||| |||||||||||| |
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|
| T |
3299204 |
gtcatttgtactagggttgccaaaatatttactttgcttgatccatttaccttgacccactgtttcttaaaggctggtcaatactgggatgcacccttca |
3299303 |
T |
|
| Q |
318 |
ctccttc |
324 |
Q |
| |
|
| ||||| |
|
|
| T |
3299304 |
cgccttc |
3299310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 18 - 324
Target Start/End: Original strand, 3391897 - 3392203
Alignment:
| Q |
18 |
tcaatagcttatctgatgctacggatgttgtcaatcttatagtggacatacttccttccaaggttcagttgaatatgaatatgattcctcctcaagaaag |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |
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|
| T |
3391897 |
tcaatagcttatctgatgctacggatgttgtcaatcttatagtggacatacttccttccaaggttcggttgaatatgaatatgattcctcctgaagaaag |
3391996 |
T |
|
| Q |
118 |
atgcattttttctgttgaaatcgtcccaatttgttgcggggatttgattattctgcctagtcatattgctgcttctttcggtccaaatattggtcctatt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3391997 |
atgcattttttctgttgaaatcgtcccaatttgttgcggggatttgattattctgcctagtcatattgctgcttctttcggtccaaatattggtcctatt |
3392096 |
T |
|
| Q |
218 |
gtcatttgtactagggttgccaaaacatttactttgcttgatccatttaccttgacccactgtttcttaaagtctgatcagtactggaatgcacccttca |
317 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |||||| |||||||||||| |
|
|
| T |
3392097 |
gtcatttgtactagggttgccaaaatatttactttgcttgatccatttaccttgacccactgtttcttaaaggctggtcaatactgggatgcacccttca |
3392196 |
T |
|
| Q |
318 |
ctccttc |
324 |
Q |
| |
|
| ||||| |
|
|
| T |
3392197 |
cgccttc |
3392203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 18 - 324
Target Start/End: Complemental strand, 1164276 - 1163985
Alignment:
| Q |
18 |
tcaatagcttatctgatgctacggatgttgtcaatcttatagtggacatacttccttccaaggttcagttgaatatgaatatgattcctcctcaagaaag |
117 |
Q |
| |
|
|||||||||||||||||||| |||| |||||||||||||||||||||||||||||| || ||||||||| ||| | || | ||| | |
|
|
| T |
1164276 |
tcaatagcttatctgatgctgcggaagttgtcaatcttatagtggacatacttcctgcccaggttcagtggaacaagatt--gatcc------------- |
1164192 |
T |
|
| Q |
118 |
atgcattttttctgttgaaatcgtcccaatttgttgcggggatttgattattctgcctagtcatattgctgcttctttcggtccaaatattggtcctatt |
217 |
Q |
| |
|
|| | |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
1164191 |
ataccttttttctgttgaaatcgtcccaatttgctgcggggatttgattattctgcctagtaatattgctgcttctttaggtccaaatattggtcctatt |
1164092 |
T |
|
| Q |
218 |
gtcatttgtactagggttgccaaaacatttactttgcttgatccatttaccttgacccactgtttcttaaagtctgatcagtactggaatgcacccttca |
317 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |||||| |||||||||||| |
|
|
| T |
1164091 |
gttatttgtactagggttgccaaaacatttactttgcttgatccatttaccttgacccactgtttcttaaaggctggtcaatactgggatgcacccttca |
1163992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 123 - 324
Target Start/End: Original strand, 1849580 - 1849781
Alignment:
| Q |
123 |
ttttttctgttgaaatcgtcccaatttgttgcggggatttgattattctgcctagtcatattgctgcttctttcggtccaaatattggtcctattgtcat |
222 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| || |
|
|
| T |
1849580 |
ttttttctgttgaaatcgtcccaatttgctgcggggatttgattattctgcctagtaatattgctgcttctttaggtccaaatattggtcctattgttat |
1849679 |
T |
|
| Q |
223 |
ttgtactagggttgccaaaacatttactttgcttgatccatttaccttgacccactgtttcttaaagtctgatcagtactggaatgcacccttcactcct |
322 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |||||| ||||||||||||| ||| |
|
|
| T |
1849680 |
ttgtactagggttgccagaacatttactttgcttgatccatttaccttgacccgctgtttcttaaaggctgatcgttactgggatgcacccttcacgcct |
1849779 |
T |
|
| Q |
323 |
tc |
324 |
Q |
| |
|
|| |
|
|
| T |
1849780 |
tc |
1849781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 113 - 318
Target Start/End: Original strand, 38987301 - 38987506
Alignment:
| Q |
113 |
gaaagatgcattttttctgttgaaatcgtcccaatttgttgcggggatttgattattctgcctagtcatattgctgcttctttcggtccaaatattggtc |
212 |
Q |
| |
|
||||||| | |||||||||||||||||||||| ||||| |||||||||||||| |||||||| | || ||| ||||||||| |||||||||||||||| |
|
|
| T |
38987301 |
gaaagataccttttttctgttgaaatcgtccccatttgctgcggggatttgatctttctgcctcctaatgttgttgcttctttgggtccaaatattggtc |
38987400 |
T |
|
| Q |
213 |
ctattgtcatttgtactagggttgccaaaacatttactttgcttgatccatttaccttgacccactgtttcttaaagtctgatcagtactggaatgcacc |
312 |
Q |
| |
|
|||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||||||||||||| ||||| |
|
|
| T |
38987401 |
ctattgtcatatgcactagggttgccaaaacatttactttgcttgatccatttaccttgacccactgtttcttagatgctcatcagtactggaaagcacc |
38987500 |
T |
|
| Q |
313 |
cttcac |
318 |
Q |
| |
|
||||| |
|
|
| T |
38987501 |
attcac |
38987506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 96 - 318
Target Start/End: Original strand, 40417871 - 40418096
Alignment:
| Q |
96 |
atatgattcctcctcaa---gaaagatgcattttttctgttgaaatcgtcccaatttgttgcggggatttgattattctgcctagtcatattgctgcttc |
192 |
Q |
| |
|
|||||||||||||| || ||||||| | ||||| ||||||||||||||| ||||| |||||||||||||| |||||||| | || ||| |||||| |
|
|
| T |
40417871 |
atatgattcctcctgaaagtgaaagatacctttttcgtgttgaaatcgtccccatttgctgcggggatttgatctttctgcctcctaatgttgttgcttc |
40417970 |
T |
|
| Q |
193 |
tttcggtccaaatattggtcctattgtcatttgtactagggttgccaaaacatttactttgcttgatccatttaccttgacccactgtttcttaaagtct |
292 |
Q |
| |
|
||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |
|
|
| T |
40417971 |
tttcggtgaaaatattggtcctattgtcatttgcactagggttgccaaaacatttactttgcttgatccatttaccttgacccactgtttcttagatgct |
40418070 |
T |
|
| Q |
293 |
gatcagtactggaatgcacccttcac |
318 |
Q |
| |
|
||||||||||||| ||||| ||||| |
|
|
| T |
40418071 |
catcagtactggaaagcaccattcac |
40418096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 113 - 318
Target Start/End: Original strand, 39726023 - 39726219
Alignment:
| Q |
113 |
gaaagatgcattttttctgttgaaatcgtcccaatttgttgcggggatttgattattctgcctagtcatattgctgcttctttcggtccaaatattggtc |
212 |
Q |
| |
|
||||||| | |||||||||||||||||||||| ||||| |||||||||||||| |||||||| | | ||| ||||||||| ||||||||||||| |
|
|
| T |
39726023 |
gaaagataccttttttctgttgaaatcgtccccatttgctgcggggatttgatctttctgcctcctaacgttgttgcttctttgggtccaaatattg--- |
39726119 |
T |
|
| Q |
213 |
ctattgtcatttgtactagggttgccaaaacatttactttgcttgatccatttaccttgacccactgtttcttaaagtctgatcagtactggaatgcacc |
312 |
Q |
| |
|
|||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||||||||||||| ||||| |
|
|
| T |
39726120 |
------tcatatgcactagggttgccaaaacatttactttgcttgatccatttaccttgacccactgtttcttagatgctcatcagtactggaaagcacc |
39726213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 130 - 318
Target Start/End: Original strand, 39879442 - 39879621
Alignment:
| Q |
130 |
tgttgaaatcgtcccaatttgttgcggggatttgattattctgcctagtcatattgctgcttctttcggtccaaatattggtcctattgtcatttgtact |
229 |
Q |
| |
|
|||| |||||||||| ||||| |||||||||||||| |||||||| | | ||| ||||||||| ||||||||||||| |||| || ||| |
|
|
| T |
39879442 |
tgttaaaatcgtccccatttgctgcggggatttgatctttctgcctcctaacgttgttgcttctttgggtccaaatattg---------tcatatgcact |
39879532 |
T |
|
| Q |
230 |
agggttgccaaaacatttactttgcttgatccatttaccttgacccactgtttcttaaagtctgatcagtactggaatgcacccttcac |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||||||||||||| ||||| ||||| |
|
|
| T |
39879533 |
agggttgccaaaacatttactttgcttgatccatttaccttgacccactgtttcttagatgctcatcagtactggaaagcaccattcac |
39879621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 124 - 318
Target Start/End: Original strand, 39399520 - 39399708
Alignment:
| Q |
124 |
tttttctgttgaaatcgtcccaatttgttgcggggatttgattattctgcctagtcatattgctgcttctttcggtccaaatattggtcctattgtcatt |
223 |
Q |
| |
|
||||| ||||||||||||||| ||||| ||||||||||||||| |||||||| | || |||||||||| |||||| |||| ||||||||| |
|
|
| T |
39399520 |
tttttttgttgaaatcgtccccatttgctgcggggatttgatttttctgcctcctgatgttgctgcttcgttcggtgcaaa---------tattgtcata |
39399610 |
T |
|
| Q |
224 |
tgtactagggttgccaaaacatt---tactttgcttgatccatttaccttgacccactgtttcttaaagtctgatcagtactggaatgcacccttcac |
318 |
Q |
| |
|
|| |||||||||||||||| | | |||||||||||||||||||||||||||| | || ||||||| ||||||| |||||||||||||| ||||| |
|
|
| T |
39399611 |
tgcactagggttgccaaaaaaattactactttgcttgatccatttaccttgaccgctttttccttaaaggctgatcactactggaatgcacctttcac |
39399708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 124 - 318
Target Start/End: Original strand, 39168522 - 39168707
Alignment:
| Q |
124 |
tttttctgttgaaatcgtcccaatttgttgcggggatttgattattctgcctagtcatattgctgcttctttcggtccaaatattggtcctattgtcatt |
223 |
Q |
| |
|
||||| |||||||||||||||||||| ||||| ||||||||| ||||||| | ||||||||||| || ||||| ||||||||| | || |
|
|
| T |
39168522 |
tttttttgttgaaatcgtcccaattttctgcggagatttgatttttctgccccctaatattgctgctactctcggtgcaaatattgtt---------ata |
39168612 |
T |
|
| Q |
224 |
tgtactagggttgccaaaacatttactttgcttgatccatttaccttgacccactgtttcttaaagtctgatcagtactggaatgcacccttcac |
318 |
Q |
| |
|
|| |||||||||||||||| | ||||||| |||||||||||||||||||| | || ||||||| ||||| |||||||||||||||||||||| |
|
|
| T |
39168613 |
tgcactagggttgccaaaaaaattactttacttgatccatttaccttgactgctttttccttaaaggctgatgagtactggaatgcacccttcac |
39168707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 124 - 175
Target Start/End: Original strand, 40596251 - 40596302
Alignment:
| Q |
124 |
tttttctgttgaaatcgtcccaatttgttgcggggatttgattattctgcct |
175 |
Q |
| |
|
||||||||||||||||||||| ||||| | ||||||||||||| |||||||| |
|
|
| T |
40596251 |
tttttctgttgaaatcgtccccatttgctacggggatttgatttttctgcct |
40596302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 1849490 - 1849558
Alignment:
| Q |
18 |
tcaatagcttatctgatgctacggatgttgtcaatcttatagtggacatacttccttccaaggttcagt |
86 |
Q |
| |
|
|||||||| ||||||||||| || | ||||||||||||||| || |||||||||| || |||||||| |
|
|
| T |
1849490 |
tcaatagcatatctgatgctgcgaaagttgtcaatcttataacgggcatacttcctgccctggttcagt |
1849558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 124 - 323
Target Start/End: Complemental strand, 25912766 - 25912567
Alignment:
| Q |
124 |
tttttctgttgaaatcgtcccaatttgttgcggggatttgattattctgcctagtcatattgctgcttctttcggtccaaatattggtcctattgtcatt |
223 |
Q |
| |
|
||||| ||||||||||||||| |||| ||| ||||||||||| |||||||| | || |||||||||||||| || |||||||||||||||||||||| |
|
|
| T |
25912766 |
tttttttgttgaaatcgtccccattttctgctgggatttgatttttctgcctcctaatgttgctgcttctttcagtgtaaatattggtcctattgtcatt |
25912667 |
T |
|
| Q |
224 |
tgtactagggttgccaaaacatttactttgcttgatccatttaccttgacccactgtttcttaaagtctgatcagtactggaatgcacccttcactcctt |
323 |
Q |
| |
|
|| |||||||||||||||||||||||||| |||||||||||||||||||| || |||||||| ||| |||||||||||||||||||||||||||| |||| |
|
|
| T |
25912666 |
tgcactagggttgccaaaacatttactttacttgatccatttaccttgactcattgtttcttgaaggctgatcagtactggaatgcacccttcacgcctt |
25912567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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