View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11379_high_64 (Length: 286)
Name: NF11379_high_64
Description: NF11379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11379_high_64 |
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Alignment Details
Target: chr5 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 14 - 271
Target Start/End: Complemental strand, 2621493 - 2621241
Alignment:
| Q |
14 |
gaagtccaaagaggttcccatacacatcatactgttcatataaacacatggactatatcagtgtcaaaactagcacaatagcaatcattaattcgttgaa |
113 |
Q |
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| T |
2621493 |
gaagcccaaagaggttcccatacacatcatactgttcatataaacacatggactatatcagtgtcaaaactagcacaatagcaatcattaattcgttgaa |
2621394 |
T |
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| Q |
114 |
tcattttttataatcaaagtttgattaattatattaaacagattacaagggatattcaaactacatcaagatacacaactcctataaatcatgccgagta |
213 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2621393 |
tcattttttataatcaaagtttgatta-----attaaacagattacaagggatattcaaactacatcaagatacacaactcctataaatcatgccgagta |
2621299 |
T |
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| Q |
214 |
accttggaggtttaggatcaaaaagtctaaacatattggtcgttcacctcatgttcct |
271 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2621298 |
accttggaggtttaggatcaaaaagtctaaacatattggtcgttcacctcatgttcct |
2621241 |
T |
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