View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11379_high_71 (Length: 257)
Name: NF11379_high_71
Description: NF11379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11379_high_71 |
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Alignment Details
Target: chr4 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 32288479 - 32288731
Alignment:
| Q |
1 |
caatggtgcttagttagtctgtgtgtgttgctgcagaaaataatttcatgt----------gttgagtttgctatatagtttctaagaatagagtctagt |
90 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||| |
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| T |
32288479 |
caatggtgcttagttagtctgtgtgtgttgctgcagaaaataatgtcacgtaagatctagtgttgagtttgctatatagtttctaagaatagagtctagt |
32288578 |
T |
|
| Q |
91 |
ttttgttgcaactaaaatattattat---aaatgtactccnnnnnnnnntactataaataataatgttgctttgtgtttgtttcactaattatagaaata |
187 |
Q |
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|||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
32288579 |
ttttgttgcaactaaaatattattattataaatgtactccaaaaaaatatattataaataataatgttgctttgtgtttgtttcactaactatagaaata |
32288678 |
T |
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| Q |
188 |
tgattttctgttgacaatattatagaaataatgtagcatttggtgcgtctgtg |
240 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||| ||||| |
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| T |
32288679 |
tgattttctgttgacagtattatagaaataatgtagcatttggtgcgcctgtg |
32288731 |
T |
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