View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11379_high_80 (Length: 240)
Name: NF11379_high_80
Description: NF11379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11379_high_80 |
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| [»] chr1 (7 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-119; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 17 - 240
Target Start/End: Complemental strand, 47745921 - 47745698
Alignment:
| Q |
17 |
acctttgccgcagttgtctcaacgattcaagagttcttctcacaaaactttgtccaacccaaaaagaagcaattagttggtatgataactgcatgttgcg |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47745921 |
acctttgccgcagttgtctcaacgattcaagagttcttctcacaaaactttgtccaacccaaaaagaagcaattagttggtatgataactgcatgttgcg |
47745822 |
T |
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| Q |
117 |
ttactcaaaccgatcaatatttggcattatggatgcttcattttcatattataagtggaacaatagaaatgtaaccgatgtggatcaatttaatcaagtt |
216 |
Q |
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| T |
47745821 |
ttactcaaaccgatcaatatttggcattatggatacttcattttcatattataagtggaacaatagaaatgtaaccgatgtggctcaatttaatcaagtt |
47745722 |
T |
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| Q |
217 |
cttgggaacttgatgaggaaactc |
240 |
Q |
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|||||||||||||||||||||||| |
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| T |
47745721 |
cttgggaacttgatgaggaaactc |
47745698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 20 - 240
Target Start/End: Complemental strand, 47718129 - 47717909
Alignment:
| Q |
20 |
tttgccgcagttgtctcaacgattcaagagttcttctcacaaaactttgtccaacccaaaaagaagcaattagttggtatgataactgcatgttgcgtta |
119 |
Q |
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||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| ||| ||||||||| | |||||||||||||||| |
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| T |
47718129 |
tttgccgaagttgtctcaatgattcaagagttcttctcacaaaactttgtccaaaccaaaaagaagcgattggttggtatgttgactgcatgttgcgtta |
47718030 |
T |
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| Q |
120 |
ctcaaaccgatcaatatttggcattatggatgcttcattttcatattataagtggaacaatagaaatgtaaccgatgtggatcaatttaatcaagttctt |
219 |
Q |
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| T |
47718029 |
ctcaaaccgatcaatattcggcgttatggaagcttcaccttcatatttaaagtggaccttgaaaaatgcaaccgaggtggatcaatttaatcaagttctt |
47717930 |
T |
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| Q |
220 |
gggaacttgatgaggaaactc |
240 |
Q |
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| T |
47717929 |
gggaacttgatgaggaaactc |
47717909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 20 - 239
Target Start/End: Complemental strand, 47760250 - 47760031
Alignment:
| Q |
20 |
tttgccgcagttgtctcaacgattcaagagttcttctcacaaaactttgtccaacccaaaaagaagcaattagttggtatgataactgcatgttgcgtta |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
47760250 |
tttgccgcagttgtctcaacgattcaagagttcttctcacaaaactttgtccaaaccaaaaagaagcaattggttggtatgataactgcatgttgcgtta |
47760151 |
T |
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| Q |
120 |
ctcaaaccgatcaatatttggcattatggatgcttcattttcatattataagtggaaca-atagaaatgtaaccgatgtggatcaatttaatcaagttct |
218 |
Q |
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| T |
47760150 |
ctcaaaccgatcaatattcggcgttatggaaggttcaccaaagttttatatgtggaacatata-taatgtaacagaggtggatcaatttaaccaagttct |
47760052 |
T |
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| Q |
219 |
tgggaacttgatgaggaaact |
239 |
Q |
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| T |
47760051 |
tgggaacttgatgaggaaact |
47760031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 20 - 144
Target Start/End: Complemental strand, 47713335 - 47713211
Alignment:
| Q |
20 |
tttgccgcagttgtctcaacgattcaagagttcttctcacaaaactttgtccaacccaaaaagaagcaattagttggtatgataactgcatgttgcgtta |
119 |
Q |
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||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| ||| |||||||||||| |
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| T |
47713335 |
tttgccgcagtcgtctcaatgattcaagagttcttctcacaaaactttgtccaaaccaaaaagaagcaattggttggtatgaggactacatgttgcgtta |
47713236 |
T |
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| Q |
120 |
ctcaaaccgatcaatatttggcatt |
144 |
Q |
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| T |
47713235 |
ctcaaaccaatcaatatttggcatt |
47713211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 184 - 239
Target Start/End: Complemental strand, 47713171 - 47713116
Alignment:
| Q |
184 |
aatgtaaccgatgtggatcaatttaatcaagttcttgggaacttgatgaggaaact |
239 |
Q |
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| T |
47713171 |
aatgtaaccgaggtggatccatttaatcgagttcttggaaacttgatgaggaaact |
47713116 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 54 - 101
Target Start/End: Original strand, 6523721 - 6523768
Alignment:
| Q |
54 |
tctcacaaaactttgtccaacccaaaaagaagcaattagttggtatga |
101 |
Q |
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| T |
6523721 |
tctcacacagctttgtccaaaccaaaaagaagcaattggttggtatga |
6523768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 140
Target Start/End: Original strand, 6521777 - 6521811
Alignment:
| Q |
106 |
tgcatgttgcgttactcaaaccgatcaatatttgg |
140 |
Q |
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| T |
6521777 |
tgcatgttgcgttactcaaaccgttcaatatttgg |
6521811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 1e-18; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 21 - 140
Target Start/End: Complemental strand, 28831387 - 28831268
Alignment:
| Q |
21 |
ttgccgcagttgtctcaacgattcaagagttcttctcacaaaactttgtccaacccaaaaagaagcaattagttggtatgataactgcatgttgcgttac |
120 |
Q |
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||||||| ||| ||| ||| |||||||||||||||| ||| || |||||||| ||||||||||||||||| |||| ||| || ||||||||||||||| |
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| T |
28831387 |
ttgccgccgttatcttaacaattcaagagttcttctaacacaaaattgtccaaaccaaaaagaagcaattatttggactgacaattgcatgttgcgttac |
28831288 |
T |
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| Q |
121 |
tcaaaccgatcaatatttgg |
140 |
Q |
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|| || || || |||||||| |
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| T |
28831287 |
tccaatcggtccatatttgg |
28831268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 21 - 128
Target Start/End: Complemental strand, 28856583 - 28856476
Alignment:
| Q |
21 |
ttgccgcagttgtctcaacgattcaagagttcttctcacaaaactttgtccaacccaaaaagaagcaattagttggtatgataactgcatgttgcgttac |
120 |
Q |
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||||||||||||||| ||| |||||||||||||||| ||| || |||||||| | |||||||||||||| || || | | || |||||| |||||||| |
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| T |
28856583 |
ttgccgcagttgtcttaacaattcaagagttcttctaacacaaaattgtccaaacaaaaaagaagcaattggtaggattaacaaatgcatgctgcgttac |
28856484 |
T |
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| Q |
121 |
tcaaaccg |
128 |
Q |
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|||||||| |
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| T |
28856483 |
tcaaaccg |
28856476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 21 - 120
Target Start/End: Complemental strand, 28861860 - 28861761
Alignment:
| Q |
21 |
ttgccgcagttgtctcaacgattcaagagttcttctcacaaaactttgtccaacccaaaaagaagcaattagttggtatgataactgcatgttgcgttac |
120 |
Q |
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||||||||||||||| ||| |||||||||||||||| ||| || ||||| | |||||||||||||||| ||||| ||| || |||||| |||||||| |
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| T |
28861860 |
ttgccgcagttgtcttaacaattcaagagttcttctaacacaaaaatgtcctaaccaaaaagaagcaattggttggattgacaaatgcatgctgcgttac |
28861761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 78 - 140
Target Start/End: Complemental strand, 28875897 - 28875835
Alignment:
| Q |
78 |
aaaagaagcaattagttggtatgataactgcatgttgcgttactcaaaccgatcaatatttgg |
140 |
Q |
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||||||||||||| ||||| ||| ||||||||| |||||||||||| ||| ||||||||||| |
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| T |
28875897 |
aaaagaagcaattggttggattgacaactgcatgctgcgttactcaagccggtcaatatttgg |
28875835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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