View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11379_low_10 (Length: 586)

Name: NF11379_low_10
Description: NF11379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11379_low_10
NF11379_low_10
[»] chr3 (3 HSPs)
chr3 (151-220)||(13822995-13823064)
chr3 (151-227)||(4264441-4264517)
chr3 (18-91)||(13822865-13822935)
[»] chr1 (9 HSPs)
chr1 (151-224)||(17224158-17224231)
chr1 (151-225)||(25871695-25871769)
chr1 (27-87)||(17224295-17224355)
chr1 (151-226)||(19151977-19152052)
chr1 (151-224)||(23679036-23679109)
chr1 (27-85)||(25871838-25871895)
chr1 (34-83)||(19151847-19151897)
chr1 (34-83)||(23678903-23678953)
chr1 (151-211)||(38245596-38245656)
[»] chr7 (4 HSPs)
chr7 (151-214)||(12103200-12103263)
chr7 (151-224)||(41546039-41546112)
chr7 (18-91)||(12103324-12103394)
chr7 (34-83)||(41546192-41546242)
[»] chr6 (2 HSPs)
chr6 (18-80)||(22053108-22053170)
chr6 (151-229)||(22053245-22053317)
[»] chr4 (3 HSPs)
chr4 (151-225)||(14056230-14056304)
chr4 (151-226)||(55039335-55039410)
chr4 (34-83)||(55039490-55039540)
[»] chr2 (2 HSPs)
chr2 (18-80)||(44363493-44363555)
chr2 (151-229)||(44363630-44363702)
[»] chr8 (3 HSPs)
chr8 (18-91)||(24924508-24924581)
chr8 (151-226)||(31386891-31386965)
chr8 (165-224)||(1086556-1086616)
[»] chr5 (1 HSPs)
chr5 (176-216)||(1501226-1501266)


Alignment Details
Target: chr3 (Bit Score: 58; Significance: 4e-24; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 151 - 220
Target Start/End: Original strand, 13822995 - 13823064
Alignment:
Q  151 attattaattgtattgccacacaaaggtggtataaggtgtattaccacctatggtggtatacctatcact 220  Q
    ||||||||||||||||||||| || |||||||||||||||||| ||||||||||||||||||||||||||    
T  13822995 attattaattgtattgccacataagggtggtataaggtgtattgccacctatggtggtatacctatcact 13823064  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 151 - 227
Target Start/End: Complemental strand, 4264517 - 4264441
Alignment:
Q  151 attattaattgtattgccacacaaaggtggtataaggtgtattaccacctatggtggtatacctatcactgctcttt 227  Q
    ||||||| ||||  ||||||| || |||||||||||||||| | ||||||||||||||| |||||||||||||||||    
T  4264517 attattatttgtggtgccacataagggtggtataaggtgtagtgccacctatggtggtacacctatcactgctcttt 4264441  T

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Target: chr3; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 18 - 91
Target Start/End: Original strand, 13822865 - 13822935
Alignment:
Q  18 gaatggatggaactagggtgaagaaagaaaaattttccaccgaatgaattgaaatgagagagggtacggctaaa 91  Q
    ||||||||||||||||||||||   ||| |||| ||||||||||||||||||||||| | ||||||||||||||    
T  13822865 gaatggatggaactagggtgaa---agagaaatgttccaccgaatgaattgaaatgataaagggtacggctaaa 13822935  T

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Target: chr1 (Bit Score: 58; Significance: 4e-24; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 151 - 224
Target Start/End: Complemental strand, 17224231 - 17224158
Alignment:
Q  151 attattaattgtattgccacacaaaggtggtataaggtgtattaccacctatggtggtatacctatcactgctc 224  Q
    ||||||| |||| |||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||    
T  17224231 attattatttgtgttgccacacaaaggtggtataaggtgtattgccacctatggtggtacacctatcactgctc 17224158  T

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Target: chr1; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 151 - 225
Target Start/End: Complemental strand, 25871769 - 25871695
Alignment:
Q  151 attattaattgtattgccacacaaaggtggtataaggtgtattaccacctatggtggtatacctatcactgctct 225  Q
    ||||||| |||| |||||||| || |||||||||||||||||| ||||||||||||||| |||||||||||||||    
T  25871769 attattatttgtgttgccacaaaagggtggtataaggtgtattgccacctatggtggtacacctatcactgctct 25871695  T

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Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 27 - 87
Target Start/End: Complemental strand, 17224355 - 17224295
Alignment:
Q  27 gaactagggtgaagaaagaaaaattttccaccgaatgaattgaaatgagagagggtacggc 87  Q
    ||||||||||||||||||| |||||||| | | ||||||||||||||||||||||||||||    
T  17224355 gaactagggtgaagaaagagaaattttctatcaaatgaattgaaatgagagagggtacggc 17224295  T

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Target: chr1; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 151 - 226
Target Start/End: Original strand, 19151977 - 19152052
Alignment:
Q  151 attattaattgtattgccacacaaaggtggtataaggtgtattaccacctatggtggtatacctatcactgctctt 226  Q
    ||||||| ||||  ||||||| || |||||||||||||||| | ||||||||||||||| ||||||||||||||||    
T  19151977 attattatttgtggtgccacataagggtggtataaggtgtagtgccacctatggtggtacacctatcactgctctt 19152052  T

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Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 151 - 224
Target Start/End: Original strand, 23679036 - 23679109
Alignment:
Q  151 attattaattgtattgccacacaaaggtggtataaggtgtattaccacctatggtggtatacctatcactgctc 224  Q
    ||||||| ||||  ||||||| || |||||||||||||||| | ||||||||||||||| ||||||||||||||    
T  23679036 attattatttgtggtgccacataagggtggtataaggtgtagtgccacctatggtggtacacctatcactgctc 23679109  T

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Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 27 - 85
Target Start/End: Complemental strand, 25871895 - 25871838
Alignment:
Q  27 gaactagggtgaagaaagaaaaattttccaccgaatgaattgaaatgagagagggtacg 85  Q
    ||||||||||||||||||| ||| |||||||| ||||||||| ||||||||||||||||    
T  25871895 gaactagggtgaagaaagagaaaatttccaccaaatgaattg-aatgagagagggtacg 25871838  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 34 - 83
Target Start/End: Original strand, 19151847 - 19151897
Alignment:
Q  34 ggtgaagaaagaaaaattttccaccgaa-tgaattgaaatgagagagggta 83  Q
    |||||||||||| |||||||||| | || ||||||||||||||||||||||    
T  19151847 ggtgaagaaagagaaattttccaacaaaatgaattgaaatgagagagggta 19151897  T

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Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 34 - 83
Target Start/End: Original strand, 23678903 - 23678953
Alignment:
Q  34 ggtgaagaaagaaaaattttccaccgaa-tgaattgaaatgagagagggta 83  Q
    |||||||||||| |||||||||| | || ||||||||||||||||||||||    
T  23678903 ggtgaagaaagagaaattttccaacaaaatgaattgaaatgagagagggta 23678953  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 151 - 211
Target Start/End: Original strand, 38245596 - 38245656
Alignment:
Q  151 attattaattgtattgccacacaaaggtggtataaggtgtattaccacctatggtggtata 211  Q
    |||||||||  ||||||||||||| ||||||| |||||||||| |||  || |||||||||    
T  38245596 attattaatgatattgccacacaagggtggtacaaggtgtattgccatgtacggtggtata 38245656  T

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Target: chr7 (Bit Score: 56; Significance: 6e-23; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 151 - 214
Target Start/End: Complemental strand, 12103263 - 12103200
Alignment:
Q  151 attattaattgtattgccacacaaaggtggtataaggtgtattaccacctatggtggtatacct 214  Q
    |||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||    
T  12103263 attattaattgtattgccacacaagggtggtataaggtgtattgccacctatggtggtatacct 12103200  T

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Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 151 - 224
Target Start/End: Complemental strand, 41546112 - 41546039
Alignment:
Q  151 attattaattgtattgccacacaaaggtggtataaggtgtattaccacctatggtggtatacctatcactgctc 224  Q
    ||||||| ||||  ||||||| || |||||||||||||||| | ||||||||||||||| ||||||||||||||    
T  41546112 attattatttgtggtgccacataagggtggtataaggtgtagtgccacctatggtggtacacctatcactgctc 41546039  T

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Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 91
Target Start/End: Complemental strand, 12103394 - 12103324
Alignment:
Q  18 gaatggatggaactagggtgaagaaagaaaaattttccaccgaatgaattgaaatgagagagggtacggctaaa 91  Q
    ||||| ||||||||||||||||   ||| ||| ||| ||| |||||||||||||||||||||||||||||||||    
T  12103394 gaatgaatggaactagggtgaa---agagaaaattttcactgaatgaattgaaatgagagagggtacggctaaa 12103324  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 34 - 83
Target Start/End: Complemental strand, 41546242 - 41546192
Alignment:
Q  34 ggtgaagaaagaaaaattttccaccgaa-tgaattgaaatgagagagggta 83  Q
    |||||||||||| |||||||||| | || ||||||||||||||||||||||    
T  41546242 ggtgaagaaagagaaattttccaacaaaatgaattgaaatgagagagggta 41546192  T

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Target: chr6 (Bit Score: 55; Significance: 3e-22; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 18 - 80
Target Start/End: Original strand, 22053108 - 22053170
Alignment:
Q  18 gaatggatggaactagggtgaagaaagaaaaattttccaccgaatgaattgaaatgagagagg 80  Q
    |||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||    
T  22053108 gaatggatggaactagggtgaagaaagagaaattttccaccaaatgaattgaaatgagagagg 22053170  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 151 - 229
Target Start/End: Original strand, 22053245 - 22053317
Alignment:
Q  151 attattaattgtattgccacacaaaggtggtataaggtgtattaccacctatggtggtatacctatcactgctctttaa 229  Q
    ||||||||||||||||||||| |||||||||||||||||      || ||||||||||||| |||||||||||| ||||    
T  22053245 attattaattgtattgccacataaaggtggtataaggtg------catctatggtggtatatctatcactgctcattaa 22053317  T

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Target: chr4 (Bit Score: 55; Significance: 3e-22; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 151 - 225
Target Start/End: Original strand, 14056230 - 14056304
Alignment:
Q  151 attattaattgtattgccacacaaaggtggtataaggtgtattaccacctatggtggtatacctatcactgctct 225  Q
    ||||||| |||| ||||||||||| |||||||||||||||||| ||||||||||||||| |||||||||||||||    
T  14056230 attattatttgtgttgccacacaagggtggtataaggtgtattgccacctatggtggtacacctatcactgctct 14056304  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 151 - 226
Target Start/End: Complemental strand, 55039410 - 55039335
Alignment:
Q  151 attattaattgtattgccacacaaaggtggtataaggtgtattaccacctatggtggtatacctatcactgctctt 226  Q
    ||||||| ||||  ||||||| || |||||||||||||||| | ||||||||||||||| ||||||||||||||||    
T  55039410 attattatttgtggtgccacataagggtggtataaggtgtagtgccacctatggtggtacacctatcactgctctt 55039335  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 34 - 83
Target Start/End: Complemental strand, 55039540 - 55039490
Alignment:
Q  34 ggtgaagaaagaaaaattttccaccgaa-tgaattgaaatgagagagggta 83  Q
    |||||||||||| |||||||||| | || ||||||||||||||||||||||    
T  55039540 ggtgaagaaagagaaattttccaacaaaatgaattgaaatgagagagggta 55039490  T

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Target: chr2 (Bit Score: 55; Significance: 3e-22; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 18 - 80
Target Start/End: Original strand, 44363493 - 44363555
Alignment:
Q  18 gaatggatggaactagggtgaagaaagaaaaattttccaccgaatgaattgaaatgagagagg 80  Q
    |||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||    
T  44363493 gaatggatggaactagggtgaagaaagagaaattttccaccaaatgaattgaaatgagagagg 44363555  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 151 - 229
Target Start/End: Original strand, 44363630 - 44363702
Alignment:
Q  151 attattaattgtattgccacacaaaggtggtataaggtgtattaccacctatggtggtatacctatcactgctctttaa 229  Q
    ||||||||||||||||||||| |||||||||||||||||      || ||||||||||||| |||||||||||| ||||    
T  44363630 attattaattgtattgccacataaaggtggtataaggtg------catctatggtggtatatctatcactgctcattaa 44363702  T

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Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 18 - 91
Target Start/End: Original strand, 24924508 - 24924581
Alignment:
Q  18 gaatggatggaactagggtgaagaaagaaaaattttccaccgaatgaattgaaatgagagagggtacggctaaa 91  Q
    ||||| |||||||||||||||||||||| |||||||||| | ||||||||||||||||||||| ||||| ||||    
T  24924508 gaatgaatggaactagggtgaagaaagagaaattttccaacaaatgaattgaaatgagagaggatacggttaaa 24924581  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 151 - 226
Target Start/End: Complemental strand, 31386965 - 31386891
Alignment:
Q  151 attattaattgtattgccacacaaaggtggtataaggtgtattaccacctatggtggtatacctatcactgctctt 226  Q
    |||||||||| ||| |||||| ||  |||||||||||||| || ||||||||||||||| ||||||||||||||||    
T  31386965 attattaattttat-gccacataagagtggtataaggtgtgttgccacctatggtggtacacctatcactgctctt 31386891  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 165 - 224
Target Start/End: Original strand, 1086556 - 1086616
Alignment:
Q  165 tgccacacaaaggtggtataaggtg-tattaccacctatggtggtatacctatcactgctc 224  Q
    |||||||||||||||||||| |||| |||| ||||||||||||||| || |||||||||||    
T  1086556 tgccacacaaaggtggtatatggtggtattgccacctatggtggtacacttatcactgctc 1086616  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 176 - 216
Target Start/End: Original strand, 1501226 - 1501266
Alignment:
Q  176 ggtggtataaggtgtattaccacctatggtggtatacctat 216  Q
    ||||||| |||||||||| ||||||||||||||||||||||    
T  1501226 ggtggtagaaggtgtattgccacctatggtggtatacctat 1501266  T

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