View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11379_low_13 (Length: 568)
Name: NF11379_low_13
Description: NF11379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11379_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 506; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 506; E-Value: 0
Query Start/End: Original strand, 20 - 557
Target Start/End: Complemental strand, 25535640 - 25535103
Alignment:
| Q |
20 |
gtacgagttcttctttaacctctttaaaattgctcctaacattgtctcttataactttgttatcaatgcctattgtgatgagggccgcattgacgcggct |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
25535640 |
gtacgagttcttctttaacctctttaaaattgctcctaacattgtctcttataactttgttatcaatgcttattgtgatgagggccgcattgacgcggct |
25535541 |
T |
|
| Q |
120 |
ctcgatgtttttcggaaaatgaaggccgatgcatctatcaaaccctcacccgttacttaccgcattatcaccaaatgtttgatcagtgctggtcgtattg |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25535540 |
ctcgatgtttttcggaaaatgaaggccgatgcatctatcaaaccctcacccgttacttaccgcattatcaccaaatgtttgatcagtgctggtcgtattg |
25535441 |
T |
|
| Q |
220 |
aggatgcccgtgacatcttggttaagatgttatacacgggccatgcggatttcactgtgtatgctaatatcatatctgcttgtattcaactgggaaatgt |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25535440 |
aggatgcccgtgacatcttggttaagatgttatacacgggccatgcggatttcactgtgtatgctaatatcatatctgcttgtattcaactgggaaatgt |
25535341 |
T |
|
| Q |
320 |
tgataaagctaatgagcttattgatgagcttaagaggtggtgtccgaattattacattggcgatgtgagtgtcacttatatacattggttttttgagcaa |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25535340 |
tgataaagctaatgagcttattgatgagcttaagaggtggtgtccgaattattacattggcgatgtgagtgtcacttatatacattggttttttgagcaa |
25535241 |
T |
|
| Q |
420 |
gaaagagataaggaggctatggagtgttataactccttattgaaccgcaagtgtatgatgagacctaaaacttgcaatatgctcttggagattttgttca |
519 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
25535240 |
gaaagagataaggaggctatggagtgttataactccttattgaaccgcaagtgtatgatgagacctaaaacttgcaatatgctcttggagattttgctca |
25535141 |
T |
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| Q |
520 |
ggtttggnnnnnnnnccgaggcttgggacttgtttcat |
557 |
Q |
| |
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||||||| ||||||||||||||||||||||| |
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| T |
25535140 |
ggtttggaaaaaaaaccgaggcttgggacttgtttcat |
25535103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 20 - 506
Target Start/End: Original strand, 25514801 - 25515294
Alignment:
| Q |
20 |
gtacgagttcttctttaacctctttaaaattgctcctaacattgtctcttataactttgttatcaatgcctattgtgatgagggccgcattgacgcggct |
119 |
Q |
| |
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||||||||||||||||||| | |||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25514801 |
gtacgagttcttctttaacttgtttaaaattgttcctaacattgtctctcataactttgttatcaatgcctattgtgatgagggccgcattgacgcggct |
25514900 |
T |
|
| Q |
120 |
ctcgatgtttttcggaaaatgaaggccgatgcatctatcaaaccctcacccgttacttaccgcattatcaccaaatgtttgatcagtgctggtcgtattg |
219 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || | |||||||||||| ||||||||||||||||||||||| |
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| T |
25514901 |
ctcgatgtttttcggaaaatgaaggccgatgcatctatcaaaccctcaccggttacctatcagattatcaccaaagctttgatcagtgctggtcgtattg |
25515000 |
T |
|
| Q |
220 |
aggatgcccgtgacatcttggttaagatgttatacacgggccatgcggatttcactgtgtatgctaatatcatatctgcttgtattcaac------tggg |
313 |
Q |
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| |||||||||||||||||| |||||||||||| ||||||||||| |||||| |||||| || ||| || ||||||||||| |||||| ||| |
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| T |
25515001 |
aagatgcccgtgacatcttgtttaagatgttatccacgggccatgtggatttaactgtg--tgacaatctcttatctgcttgtcttcaactgacagtggt |
25515098 |
T |
|
| Q |
314 |
aaatgttgataaagctaatgagcttattgatgagcttaagaggtggtgtccgaattattacattggcgatgtgagtgtcacttatatacattggtttttt |
413 |
Q |
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|||| ||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| |||| |||||||| ||||||||| || |||| ||| |
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| T |
25515099 |
aaattttgataaggctaatgagcttattgatgaccttaagaggtggtgtccgaattattacaacggcgttgtgagtgccacttatatgcagtggtgcttt |
25515198 |
T |
|
| Q |
414 |
gagcaagaaagagataaggaggctatggagtgttataactccttattgaaccgcaagtgt---atgatgagacctaaaacttgcaatatgctcttg |
506 |
Q |
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| ||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| |||||| |
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| T |
25515199 |
gtacaaagaagagagaaggaggctatggagtgttataactccttattgaaccgcaagtgtacgatgatgagacctgaaacttgcaatattctcttg |
25515294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 20 - 557
Target Start/End: Complemental strand, 25527611 - 25527071
Alignment:
| Q |
20 |
gtacgagttcttctttaacctctttaaaattgctcctaacattgtctcttataactttgttatcaatgcctattgtgatgagggccgcattgacgcggct |
119 |
Q |
| |
|
||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| | ||||| || ||||||||||||||| ||||||| ||||| |
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| T |
25527611 |
gtacgagttcttctttaactcgtttaaaattactcctaacattgtctcttataactttatgatcaacgcatattgtgatgagggctgcattgatgcggcc |
25527512 |
T |
|
| Q |
120 |
ctcgatgtttttcggaaaatgaaggccgatgcatctatcaaaccctcacccgttacttaccgcattatcaccaaatgtttgatcagtgctggtcgtattg |
219 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||| ||||| || | ||||||||||||||| |||||| |||||||||||||| |
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| T |
25527511 |
ctcgatgtttttcggaaaatgaaggctgatgcatctatcaaaccctcactggttacctatcagattatcaccaaatgtatgatcaatgctggtcgtattg |
25527412 |
T |
|
| Q |
220 |
aggatgcccgtgacatcttggttaagatgttat---acacgggccatgcggatttcactgtgtatgctaatatcatatctgcttgtattcaactgggaaa |
316 |
Q |
| |
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|||| ||| ||||||| | | || ||||||||| || |||| ||| | |||| | | |||||| |||| | | || |||||| |||||||||||| |
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| T |
25527411 |
aggacgccagtgacatttggtttgagatgttattagactcgggtcataccgattcctcggtgtataataatctgacattggcttgttctcaactgggaaa |
25527312 |
T |
|
| Q |
317 |
tgttgataaagctaatgagcttattgatgagcttaagaggtggtgtccgaattattacattggcgatgtgagtgtcacttatatacattggttttttgag |
416 |
Q |
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| | ||||| ||||||||| |||||||||||||||||| ||||||| |||| || ||| | |||||||| |||||| || |||||||| || || |
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| T |
25527311 |
tttggataaggctaatgagtttattgatgagcttaagataaggtgtccatattaccaccatggtgttgtgagtgccacttacatgaattggtttcttaag |
25527212 |
T |
|
| Q |
417 |
caagaaagagataaggaggctatggagtgttataactccttattgaaccgcaagtgtatgatgagacctaaaacttgcaatatgctcttggagattttgt |
516 |
Q |
| |
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|||| |||||||||||| || |||||||||||||| || ||||||||||||||||||| |||||||||| ||||| || || | ||||||||| ||||| |
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| T |
25527211 |
caaggaagagataaggacgccatggagtgttataagtctttattgaaccgcaagtgtaggatgagacctgaaactggcgatgttctcttggaggttttgc |
25527112 |
T |
|
| Q |
517 |
tcaggtttggnnnnnnnnccgaggcttgggacttgtttcat |
557 |
Q |
| |
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||| || ||| | ||||||||||||||||||||| |
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| T |
25527111 |
tcaagtatggaaagaaaactgaggcttgggacttgtttcat |
25527071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 405 - 497
Target Start/End: Complemental strand, 25538248 - 25538156
Alignment:
| Q |
405 |
tggttttttgagcaagaaagagataaggaggctatggagtgttataactccttattgaaccgcaagtgtatgatgagacctaaaacttgcaat |
497 |
Q |
| |
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||||||||| || | | |||||| ||||| || ||||||| |||| ||||||||||||||| ||||| || |||||||||| ||||||||||| |
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| T |
25538248 |
tggttttttaaggagggaagagaaaaggaagccatggagtcttatgactccttattgaaccacaagtttaggatgagacctgaaacttgcaat |
25538156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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