View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11379_low_14 (Length: 556)
Name: NF11379_low_14
Description: NF11379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11379_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 136; Significance: 1e-70; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 206 - 422
Target Start/End: Complemental strand, 3148243 - 3148043
Alignment:
| Q |
206 |
cgtaacaattgaattgatactactttactccgcataataacaaatattggattttctttttcctaattggtcacactcttttcatttcatttcatttcta |
305 |
Q |
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| T |
3148243 |
cgtaacaattgaattgatactactttactccgcataataacaaatattggattttctttttcctaattggtcacactcttttcatttcattt-------- |
3148152 |
T |
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| Q |
306 |
ataacaatatacaaataaatccctttaatttctctcctttgtcaagaacgtgcacatcaccatggacatggtgg---catcatcatcttcatcttctcca |
402 |
Q |
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| T |
3148151 |
-----------ctaataaatccctttaatttctctcctttctcaagaacgtgcacatcaccatggacatggtggcatcatcatcatcttcatcttctcca |
3148063 |
T |
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| Q |
403 |
acgaacgaacctcctcctcc |
422 |
Q |
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| T |
3148062 |
acgaacgaacctcctcctcc |
3148043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 12 - 173
Target Start/End: Complemental strand, 3148434 - 3148272
Alignment:
| Q |
12 |
agcaaaggaaaaaacaagcacacgcccaaaggtgatgcta------atgatgtaaccacagatgaaattgaagaaataataacgagaggaggg---gttt |
102 |
Q |
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| T |
3148434 |
agcaaaggaaaaaacaagcacacgcccaaaggtgatgctattgctaatgatgtaaccacagatgaaattgaagaaataataatgagagggggggttgttt |
3148335 |
T |
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| Q |
103 |
gacattgcatcgcatctgagtagagtagtagattagaggcggaacaatcaaagaaacttcacaacacgcgg |
173 |
Q |
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| T |
3148334 |
gacattgcatcgcatctgagtagag--------tagaggcggaacaatcaaagaaacttcacaacacgcgg |
3148272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 486 - 540
Target Start/End: Complemental strand, 3147976 - 3147922
Alignment:
| Q |
486 |
agactttctccacaaaaccaaaatcattcagtttcttggtcgcaccactccgatc |
540 |
Q |
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| T |
3147976 |
agactttctccacaaaaccaaaatcattcagtttcttggtcgcaccactccgatc |
3147922 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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