View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11379_low_17 (Length: 504)
Name: NF11379_low_17
Description: NF11379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11379_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 336; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 3 - 487
Target Start/End: Original strand, 24032431 - 24032899
Alignment:
| Q |
3 |
tgtttttgtttaaagagtgctactgaagagattcgtacgtgttttgttttaatcaaccattttggtattgcgggtctgttagactctggcctgagctcgt |
102 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24032431 |
tgttattgtttaaagagtgctactgaagagattcgtacttgttttgttttaatcaaccattttggtattgcgggtctgttagactctggcctgagctcgt |
24032530 |
T |
|
| Q |
103 |
tatcagtttagatgttgtcttctgtttggccattctgttttgttgttccgaacagtttcctttgctggtatgcaattttgttgcattcgaaggcttaagt |
202 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24032531 |
tatcagtttagatgttgtcttctgttt-------------tgttgttccgaacagtttcctttgctggtatgcaattttgttgcattcgaaggcttaagt |
24032617 |
T |
|
| Q |
203 |
taagcaaatgcaacacatattatttattgacacctctcaagaaagaaaagaaagnnnnnnnnncattgacagtatttgagaacattatttgcttcnnnnn |
302 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
24032618 |
taagcaaatgcaacacatattatttattgacacctctcaagaaagaaaagaaa---aaaaaaacattgacagtatttgagaacattatttgcttcttttt |
24032714 |
T |
|
| Q |
303 |
nnnnnnnnngagaagattgtcgatttgtacctttgattaaatttgaagttaaagtgttaaattaggacagaaaa-attagaaaacatcctgtttttaatg |
401 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
24032715 |
tttttttt-gagaagattgtcgatttgtacctttgattaaatttgaagttaaagtgttaaattaggacagaaaaaattagaaaacatcctgtttttaatg |
24032813 |
T |
|
| Q |
402 |
ccaaatattaggaattaattgttagattagtttttctccttcgacaggtgttgaacctaggatttccaactctttatcctttatgt |
487 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
24032814 |
ccaaatattaggaattaattgttagattagtttttctccttccacaggggttgaacctaggatttccaactctttatcctttatgt |
24032899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 393 - 430
Target Start/End: Original strand, 3294510 - 3294547
Alignment:
| Q |
393 |
tttttaatgccaaatattaggaattaattgttagatta |
430 |
Q |
| |
|
||||||||| |||||||||| ||||||||||||||||| |
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|
| T |
3294510 |
tttttaatgacaaatattagtaattaattgttagatta |
3294547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 393 - 437
Target Start/End: Original strand, 37882922 - 37882966
Alignment:
| Q |
393 |
tttttaatgccaaatattaggaattaattgttagattagtttttc |
437 |
Q |
| |
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||||||||| ||||||| || ||||| |||||||||||||||||| |
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| T |
37882922 |
tttttaatgacaaatatcagtaattagttgttagattagtttttc |
37882966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 393 - 444
Target Start/End: Complemental strand, 32398836 - 32398785
Alignment:
| Q |
393 |
tttttaatgccaaatattaggaattaattgttagattagtttttctccttcg |
444 |
Q |
| |
|
||||||||| |||||||||| ||||| ||||||||||||||||||||||||| |
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|
| T |
32398836 |
tttttaatggcaaatattagtaattagttgttagattagtttttctccttcg |
32398785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 393 - 442
Target Start/End: Complemental strand, 6296968 - 6296919
Alignment:
| Q |
393 |
tttttaatgccaaatattaggaattaattgttagattagtttttctcctt |
442 |
Q |
| |
|
||||||||| ||||| |||| ||||| ||||||||||||||||||||||| |
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|
| T |
6296968 |
tttttaatggcaaatgttagtaattagttgttagattagtttttctcctt |
6296919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 397 - 444
Target Start/End: Complemental strand, 9003034 - 9002987
Alignment:
| Q |
397 |
taatgccaaatattaggaattaattgttagattagtttttctccttcg |
444 |
Q |
| |
|
||||| ||||| |||| ||||| ||||||||||||||||||||||||| |
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|
| T |
9003034 |
taatgacaaatgttagtaattagttgttagattagtttttctccttcg |
9002987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 393 - 443
Target Start/End: Complemental strand, 39107858 - 39107808
Alignment:
| Q |
393 |
tttttaatgccaaatattaggaattaattgttagattagtttttctccttc |
443 |
Q |
| |
|
||||||||| ||||| |||| ||||| |||||||| ||||||||||||||| |
|
|
| T |
39107858 |
tttttaatggcaaatgttagtaattagttgttagaatagtttttctccttc |
39107808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 393 - 443
Target Start/End: Complemental strand, 1652650 - 1652600
Alignment:
| Q |
393 |
tttttaatgccaaatattaggaattaattgttagattagtttttctccttc |
443 |
Q |
| |
|
||||||||| ||||| || | ||||| |||||||||||||||||||||||| |
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| T |
1652650 |
tttttaatggcaaatgttggtaattagttgttagattagtttttctccttc |
1652600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 393 - 442
Target Start/End: Original strand, 16622588 - 16622637
Alignment:
| Q |
393 |
tttttaatgccaaatattaggaattaattgttagattagtttttctcctt |
442 |
Q |
| |
|
|||| |||| ||||| |||| ||||| ||||||||||||||||||||||| |
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|
| T |
16622588 |
ttttaaatgacaaatgttagtaattagttgttagattagtttttctcctt |
16622637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 393 - 442
Target Start/End: Original strand, 51421445 - 51421494
Alignment:
| Q |
393 |
tttttaatgccaaatattaggaattaattgttagattagtttttctcctt |
442 |
Q |
| |
|
||||||||| ||| | |||| |||||||||||| |||||||||||||||| |
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|
| T |
51421445 |
tttttaatgacaactgttagtaattaattgttatattagtttttctcctt |
51421494 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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