View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11379_low_19 (Length: 482)

Name: NF11379_low_19
Description: NF11379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11379_low_19
NF11379_low_19
[»] chr4 (15 HSPs)
chr4 (276-364)||(38154069-38154157)
chr4 (276-364)||(41788023-41788111)
chr4 (399-466)||(38153972-38154039)
chr4 (399-470)||(41787924-41787995)
chr4 (106-201)||(41788188-41788283)
chr4 (114-201)||(38154228-38154315)
chr4 (129-197)||(41787167-41787235)
chr4 (145-194)||(19693149-19693198)
chr4 (145-194)||(19703734-19703783)
chr4 (218-251)||(38154179-38154212)
chr4 (142-194)||(3066657-3066709)
chr4 (67-96)||(50513047-50513076)
chr4 (67-95)||(35364478-35364506)
chr4 (64-96)||(37432500-37432532)
chr4 (64-96)||(50513324-50513356)
[»] chr1 (12 HSPs)
chr1 (276-364)||(13099005-13099093)
chr1 (399-470)||(13098903-13098974)
chr1 (128-197)||(13110554-13110623)
chr1 (126-194)||(13099171-13099239)
chr1 (145-197)||(25820680-25820732)
chr1 (144-197)||(20595990-20596043)
chr1 (129-179)||(13098149-13098199)
chr1 (67-96)||(20224080-20224109)
chr1 (218-251)||(20595937-20595970)
chr1 (145-194)||(25820244-25820292)
chr1 (67-96)||(46320678-46320707)
chr1 (67-95)||(10279960-10279988)
[»] chr2 (9 HSPs)
chr2 (287-364)||(12736767-12736844)
chr2 (399-467)||(12736670-12736738)
chr2 (145-200)||(7538393-7538448)
chr2 (145-194)||(7537547-7537596)
chr2 (142-187)||(17102446-17102491)
chr2 (67-96)||(38731561-38731590)
chr2 (67-95)||(7464222-7464250)
chr2 (65-97)||(13123422-13123454)
chr2 (67-95)||(21843463-21843491)
[»] chr8 (9 HSPs)
chr8 (144-200)||(35409846-35409902)
chr8 (145-200)||(31190775-31190830)
chr8 (142-194)||(3340197-3340249)
chr8 (142-194)||(3345504-3345556)
chr8 (144-200)||(35410790-35410846)
chr8 (64-97)||(41788650-41788683)
chr8 (142-187)||(43658318-43658363)
chr8 (65-97)||(8834220-8834252)
chr8 (68-96)||(44885907-44885935)
[»] chr3 (8 HSPs)
chr3 (145-200)||(11961999-11962054)
chr3 (142-194)||(54717978-54718030)
chr3 (65-95)||(9153760-9153790)
chr3 (145-194)||(11962855-11962904)
chr3 (64-97)||(31577701-31577734)
chr3 (67-96)||(51336892-51336921)
chr3 (67-95)||(36441484-36441512)
chr3 (65-97)||(41223794-41223826)
[»] scaffold1171 (2 HSPs)
scaffold1171 (147-197)||(954-1004)
scaffold1171 (218-251)||(1022-1055)
[»] chr6 (6 HSPs)
chr6 (145-194)||(21004254-21004303)
chr6 (145-197)||(21003502-21003554)
chr6 (142-194)||(28932080-28932132)
chr6 (67-96)||(15149729-15149758)
chr6 (64-96)||(3195715-3195747)
chr6 (67-95)||(22279501-22279529)
[»] chr7 (8 HSPs)
chr7 (142-194)||(30085752-30085804)
chr7 (142-187)||(10715969-10716014)
chr7 (67-96)||(16537079-16537108)
chr7 (67-96)||(16628554-16628583)
chr7 (67-96)||(30401190-30401219)
chr7 (67-96)||(38053430-38053459)
chr7 (67-95)||(10312510-10312538)
chr7 (67-95)||(18074098-18074126)
[»] scaffold0250 (1 HSPs)
scaffold0250 (142-187)||(21969-22014)
[»] scaffold0352 (1 HSPs)
scaffold0352 (67-95)||(9949-9977)
[»] scaffold0283 (1 HSPs)
scaffold0283 (68-96)||(1466-1494)
[»] scaffold0016 (1 HSPs)
scaffold0016 (68-96)||(75357-75385)
[»] chr5 (5 HSPs)
chr5 (67-95)||(8986612-8986640)
chr5 (67-95)||(16079461-16079489)
chr5 (67-95)||(21583606-21583634)
chr5 (64-96)||(40767887-40767919)
chr5 (67-95)||(42947403-42947431)


Alignment Details
Target: chr4 (Bit Score: 77; Significance: 2e-35; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 276 - 364
Target Start/End: Complemental strand, 38154157 - 38154069
Alignment:
Q  276 tagaaagcacgtgaactaatacttttctagtcttcaaagtgcacaacaaggcaatgttactagtatgtttaaacatgatctgtttaatg 364  Q
    ||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38154157 tagaaagcacgtgaagtaatacttttcaagccttcaaagtgcacaacaaggcaatgttactagtatgtttaaacatgatctgtttaatg 38154069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 276 - 364
Target Start/End: Complemental strand, 41788111 - 41788023
Alignment:
Q  276 tagaaagcacgtgaactaatacttttctagtcttcaaagtgcacaacaaggcaatgttactagtatgtttaaacatgatctgtttaatg 364  Q
    ||||||||||| |||||||| |||||| || |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  41788111 tagaaagcacgcgaactaatgcttttcaagccttcaaagtgcacaacaaggcaatgttactagtatgtttaaacatggtctgtttaatg 41788023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 399 - 466
Target Start/End: Complemental strand, 38154039 - 38153972
Alignment:
Q  399 ccgctaccaacgctagtgccaggatttttcatcccatttccagttttgggggatgggctttctgttgc 466  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  38154039 ccgctaccaacgctagtgccaggatttttcatcccatttccagatttgggggatgggctttctgttgc 38153972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 399 - 470
Target Start/End: Complemental strand, 41787995 - 41787924
Alignment:
Q  399 ccgctaccaacgctagtgccaggatttttcatcccatttccagttttgggggatgggctttctgttgcattc 470  Q
    ||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |||||||||||||||||    
T  41787995 ccgctaccaacgctagtgctaggatttttcatcccatttccagatttgggggataggctttctgttgcattc 41787924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 106 - 201
Target Start/End: Complemental strand, 41788283 - 41788188
Alignment:
Q  106 tctttgccagttttggatctcaatccattattaacttggtcgttgctgacgtggaacccacatccgattagtgaagtgccacatgtattattatta 201  Q
    |||||| |||||||||| | ||||||||| || ||||||||||||||||||||| || ||||||| |||||||| ||||||| |||||||||||||    
T  41788283 tctttggcagttttggaccccaatccattgttgacttggtcgttgctgacgtggcactcacatcccattagtgaggtgccacgtgtattattatta 41788188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 114 - 201
Target Start/End: Complemental strand, 38154315 - 38154228
Alignment:
Q  114 agttttggatctcaatccattattaacttggtcgttgctgacgtggaacccacatccgattagtgaagtgccacatgtattattatta 201  Q
    ||||||||||  ||||| ||| || |||||||||||||||| ||||  ||||||||| ||||||||| ||||||||||||||||||||    
T  38154315 agttttggattccaatcaattgttgacttggtcgttgctgatgtggcccccacatcctattagtgaaatgccacatgtattattatta 38154228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 129 - 197
Target Start/End: Original strand, 41787167 - 41787235
Alignment:
Q  129 tccattattaacttggtcgttgctgacgtggaacccacatccgattagtgaagtgccacatgtattatt 197  Q
    |||||| || ||||||||||||||||||||| |||||||| | |||||||| ||||||| |||||||||    
T  41787167 tccattgttgacttggtcgttgctgacgtggcacccacattccattagtgaggtgccacgtgtattatt 41787235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 145 - 194
Target Start/End: Original strand, 19693149 - 19693198
Alignment:
Q  145 tcgttgctgacgtggaacccacatccgattagtgaagtgccacatgtatt 194  Q
    ||||||||||||||| |||||||||| |||||||| ||||||| ||||||    
T  19693149 tcgttgctgacgtggcacccacatcccattagtgaggtgccacgtgtatt 19693198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 145 - 194
Target Start/End: Original strand, 19703734 - 19703783
Alignment:
Q  145 tcgttgctgacgtggaacccacatccgattagtgaagtgccacatgtatt 194  Q
    ||||||||||||||| |||||||||| |||||||| ||||||| ||||||    
T  19703734 tcgttgctgacgtggcacccacatcccattagtgaggtgccacgtgtatt 19703783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 218 - 251
Target Start/End: Complemental strand, 38154212 - 38154179
Alignment:
Q  218 aattcatcctgttatttttaaattgaaataaatt 251  Q
    ||||||||||||||||||||||||||||||||||    
T  38154212 aattcatcctgttatttttaaattgaaataaatt 38154179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 142 - 194
Target Start/End: Complemental strand, 3066709 - 3066657
Alignment:
Q  142 tggtcgttgctgacgtggaacccacatccgattagtgaagtgccacatgtatt 194  Q
    |||||||||||||||||| || ||||||| |||||||| ||||||| ||||||    
T  3066709 tggtcgttgctgacgtggcactcacatcccattagtgaggtgccacgtgtatt 3066657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 96
Target Start/End: Original strand, 50513047 - 50513076
Alignment:
Q  67 cttaattgcacttttggactcctatctttt 96  Q
    ||||||||||||||||||||||||||||||    
T  50513047 cttaattgcacttttggactcctatctttt 50513076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 67 - 95
Target Start/End: Complemental strand, 35364506 - 35364478
Alignment:
Q  67 cttaattgcacttttggactcctatcttt 95  Q
    |||||||||||||||||||||||||||||    
T  35364506 cttaattgcacttttggactcctatcttt 35364478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 64 - 96
Target Start/End: Complemental strand, 37432532 - 37432500
Alignment:
Q  64 agacttaattgcacttttggactcctatctttt 96  Q
    |||||||||||||||||||||| ||||||||||    
T  37432532 agacttaattgcacttttggacccctatctttt 37432500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 64 - 96
Target Start/End: Complemental strand, 50513356 - 50513324
Alignment:
Q  64 agacttaattgcacttttggactcctatctttt 96  Q
    |||||||||||||||||||||| ||||||||||    
T  50513356 agacttaattgcacttttggacccctatctttt 50513324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 77; Significance: 2e-35; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 276 - 364
Target Start/End: Complemental strand, 13099093 - 13099005
Alignment:
Q  276 tagaaagcacgtgaactaatacttttctagtcttcaaagtgcacaacaaggcaatgttactagtatgtttaaacatgatctgtttaatg 364  Q
    |||||||||||||||||||| |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13099093 tagaaagcacgtgaactaatgcttttcaagccttcaaagtgcacaacaaggcaatgttactagtatgtttaaacatgatctgtttaatg 13099005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 399 - 470
Target Start/End: Complemental strand, 13098974 - 13098903
Alignment:
Q  399 ccgctaccaacgctagtgccaggatttttcatcccatttccagttttgggggatgggctttctgttgcattc 470  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  13098974 ccgctaccaacgctagtgccaggatttttcatcccatttccagatttgggggatgggctttctgttgcattc 13098903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 128 - 197
Target Start/End: Original strand, 13110554 - 13110623
Alignment:
Q  128 atccattattaacttggtcgttgctgacgtggaacccacatccgattagtgaagtgccacatgtattatt 197  Q
    ||||||| || ||||||||||||||||||||| |||||||||| |||||||| |||||||||||||||||    
T  13110554 atccattgttgacttggtcgttgctgacgtggcacccacatcccattagtgaggtgccacatgtattatt 13110623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 126 - 194
Target Start/End: Complemental strand, 13099239 - 13099171
Alignment:
Q  126 caatccattattaacttggtcgttgctgacgtggaacccacatccgattagtgaagtgccacatgtatt 194  Q
    ||||| |||||| ||||||||||||||||||||| |||||||||| |||||||| ||||||| ||||||    
T  13099239 caatctattattgacttggtcgttgctgacgtggcacccacatcccattagtgaggtgccacgtgtatt 13099171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 145 - 197
Target Start/End: Complemental strand, 25820732 - 25820680
Alignment:
Q  145 tcgttgctgacgtggaacccacatccgattagtgaagtgccacatgtattatt 197  Q
    ||||||||||||||| |||||||||| |||||||||||||||| |||||||||    
T  25820732 tcgttgctgacgtggcacccacatcccattagtgaagtgccacgtgtattatt 25820680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 144 - 197
Target Start/End: Complemental strand, 20596043 - 20595990
Alignment:
Q  144 gtcgttgctgacgtggaacccacatccgattagtgaagtgccacatgtattatt 197  Q
    |||||||||||||||| |||||||||| |||||||| ||||||| |||||||||    
T  20596043 gtcgttgctgacgtggcacccacatcccattagtgaggtgccacgtgtattatt 20595990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 129 - 179
Target Start/End: Original strand, 13098149 - 13098199
Alignment:
Q  129 tccattattaacttggtcgttgctgacgtggaacccacatccgattagtga 179  Q
    |||||| || ||||||||||||||||||||| |||||||||  ||||||||    
T  13098149 tccattgttgacttggtcgttgctgacgtggcacccacatctcattagtga 13098199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 96
Target Start/End: Original strand, 20224080 - 20224109
Alignment:
Q  67 cttaattgcacttttggactcctatctttt 96  Q
    ||||||||||||||||||||||||||||||    
T  20224080 cttaattgcacttttggactcctatctttt 20224109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 218 - 251
Target Start/End: Complemental strand, 20595970 - 20595937
Alignment:
Q  218 aattcatcctgttatttttaaattgaaataaatt 251  Q
    |||||||||||||||||||||||||||| |||||    
T  20595970 aattcatcctgttatttttaaattgaaaaaaatt 20595937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 145 - 194
Target Start/End: Original strand, 25820244 - 25820292
Alignment:
Q  145 tcgttgctgacgtggaacccacatccgattagtgaagtgccacatgtatt 194  Q
    ||||||||||||||| |||||||||| |||||||| ||||||| ||||||    
T  25820244 tcgttgctgacgtggcacccacatcc-attagtgaggtgccacgtgtatt 25820292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 96
Target Start/End: Original strand, 46320678 - 46320707
Alignment:
Q  67 cttaattgcacttttggactcctatctttt 96  Q
    ||||||||||||||||||||||||||||||    
T  46320678 cttaattgcacttttggactcctatctttt 46320707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 67 - 95
Target Start/End: Complemental strand, 10279988 - 10279960
Alignment:
Q  67 cttaattgcacttttggactcctatcttt 95  Q
    |||||||||||||||||||||||||||||    
T  10279988 cttaattgcacttttggactcctatcttt 10279960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 66; Significance: 6e-29; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 287 - 364
Target Start/End: Complemental strand, 12736844 - 12736767
Alignment:
Q  287 tgaactaatacttttctagtcttcaaagtgcacaacaaggcaatgttactagtatgtttaaacatgatctgtttaatg 364  Q
    ||||||||| |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12736844 tgaactaatgcttttcaagccttcaaagtgcacaacaaggcaatgttactagtatgtttaaacatgatctgtttaatg 12736767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 399 - 467
Target Start/End: Complemental strand, 12736738 - 12736670
Alignment:
Q  399 ccgctaccaacgctagtgccaggatttttcatcccatttccagttttgggggatgggctttctgttgca 467  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  12736738 ccgctaccaacgctagtgccaggatttttcatcccatttccagatttgggggatgggctttctgttgca 12736670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 145 - 200
Target Start/End: Complemental strand, 7538448 - 7538393
Alignment:
Q  145 tcgttgctgacgtggaacccacatccgattagtgaagtgccacatgtattattatt 200  Q
    ||||||||||||||| |||||||||| |||||||| ||||||| ||||||||||||    
T  7538448 tcgttgctgacgtggcacccacatcctattagtgaggtgccacgtgtattattatt 7538393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 145 - 194
Target Start/End: Original strand, 7537547 - 7537596
Alignment:
Q  145 tcgttgctgacgtggaacccacatccgattagtgaagtgccacatgtatt 194  Q
    ||||||||||||||| |||||||||| |||||||| ||||||| ||||||    
T  7537547 tcgttgctgacgtggcacccacatcccattagtgaggtgccacgtgtatt 7537596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 187
Target Start/End: Complemental strand, 17102491 - 17102446
Alignment:
Q  142 tggtcgttgctgacgtggaacccacatccgattagtgaagtgccac 187  Q
    |||||||||||||||||| || ||||||| |||||||| |||||||    
T  17102491 tggtcgttgctgacgtggcactcacatcccattagtgaggtgccac 17102446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 96
Target Start/End: Complemental strand, 38731590 - 38731561
Alignment:
Q  67 cttaattgcacttttggactcctatctttt 96  Q
    ||||||||||||||||||||||||||||||    
T  38731590 cttaattgcacttttggactcctatctttt 38731561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 67 - 95
Target Start/End: Complemental strand, 7464250 - 7464222
Alignment:
Q  67 cttaattgcacttttggactcctatcttt 95  Q
    |||||||||||||||||||||||||||||    
T  7464250 cttaattgcacttttggactcctatcttt 7464222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 65 - 97
Target Start/End: Original strand, 13123422 - 13123454
Alignment:
Q  65 gacttaattgcacttttggactcctatcttttt 97  Q
    ||||||||||||||||||||| |||||||||||    
T  13123422 gacttaattgcacttttggacccctatcttttt 13123454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 67 - 95
Target Start/End: Complemental strand, 21843491 - 21843463
Alignment:
Q  67 cttaattgcacttttggactcctatcttt 95  Q
    |||||||||||||||||||||||||||||    
T  21843491 cttaattgcacttttggactcctatcttt 21843463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 144 - 200
Target Start/End: Original strand, 35409846 - 35409902
Alignment:
Q  144 gtcgttgctgacgtggaacccacatccgattagtgaagtgccacatgtattattatt 200  Q
    |||||||||||||||| |||||||||| |||||||| ||||||| ||||||||||||    
T  35409846 gtcgttgctgacgtggcacccacatcccattagtgaggtgccacgtgtattattatt 35409902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 145 - 200
Target Start/End: Original strand, 31190775 - 31190830
Alignment:
Q  145 tcgttgctgacgtggaacccacatccgattagtgaagtgccacatgtattattatt 200  Q
    ||||||||||||||| |||||||| | |||||||| ||||||| ||||||||||||    
T  31190775 tcgttgctgacgtggcacccacattccattagtgacgtgccacgtgtattattatt 31190830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 142 - 194
Target Start/End: Original strand, 3340197 - 3340249
Alignment:
Q  142 tggtcgttgctgacgtggaacccacatccgattagtgaagtgccacatgtatt 194  Q
    |||||||||||||||||| || ||||||| |||||||| ||||||| ||||||    
T  3340197 tggtcgttgctgacgtggcactcacatcccattagtgaggtgccacgtgtatt 3340249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 142 - 194
Target Start/End: Complemental strand, 3345556 - 3345504
Alignment:
Q  142 tggtcgttgctgacgtggaacccacatccgattagtgaagtgccacatgtatt 194  Q
    |||||||||||||||||| || ||||||| |||||||| ||||||| ||||||    
T  3345556 tggtcgttgctgacgtggcactcacatcccattagtgaggtgccacgtgtatt 3345504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 144 - 200
Target Start/End: Complemental strand, 35410846 - 35410790
Alignment:
Q  144 gtcgttgctgacgtggaacccacatccgattagtgaagtgccacatgtattattatt 200  Q
    |||||||||||||||| |||||||| | |||||||| ||| ||| ||||||||||||    
T  35410846 gtcgttgctgacgtggcacccacatgccattagtgaggtgtcacgtgtattattatt 35410790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 64 - 97
Target Start/End: Original strand, 41788650 - 41788683
Alignment:
Q  64 agacttaattgcacttttggactcctatcttttt 97  Q
    ||||||||||||||||||| ||||||||||||||    
T  41788650 agacttaattgcacttttgaactcctatcttttt 41788683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 187
Target Start/End: Complemental strand, 43658363 - 43658318
Alignment:
Q  142 tggtcgttgctgacgtggaacccacatccgattagtgaagtgccac 187  Q
    |||||||||||||||||| || ||||||| |||||||| |||||||    
T  43658363 tggtcgttgctgacgtggcactcacatcccattagtgaggtgccac 43658318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 65 - 97
Target Start/End: Complemental strand, 8834252 - 8834220
Alignment:
Q  65 gacttaattgcacttttggactcctatcttttt 97  Q
    ||||||||||||||||||||| |||||||||||    
T  8834252 gacttaattgcacttttggacccctatcttttt 8834220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 68 - 96
Target Start/End: Original strand, 44885907 - 44885935
Alignment:
Q  68 ttaattgcacttttggactcctatctttt 96  Q
    |||||||||||||||||||||||||||||    
T  44885907 ttaattgcacttttggactcctatctttt 44885935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 145 - 200
Target Start/End: Original strand, 11961999 - 11962054
Alignment:
Q  145 tcgttgctgacgtggaacccacatccgattagtgaagtgccacatgtattattatt 200  Q
    ||||||||||||||| |||||||||| |||||||| ||||||| ||||||||||||    
T  11961999 tcgttgctgacgtggcacccacatcctattagtgaggtgccacgtgtattattatt 11962054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 142 - 194
Target Start/End: Complemental strand, 54718030 - 54717978
Alignment:
Q  142 tggtcgttgctgacgtggaacccacatccgattagtgaagtgccacatgtatt 194  Q
    |||||||||||||||||| || ||||||| |||||||| ||||||| ||||||    
T  54718030 tggtcgttgctgacgtggcactcacatcccattagtgaggtgccacgtgtatt 54717978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 65 - 95
Target Start/End: Complemental strand, 9153790 - 9153760
Alignment:
Q  65 gacttaattgcacttttggactcctatcttt 95  Q
    |||||||||||||||||||||||||||||||    
T  9153790 gacttaattgcacttttggactcctatcttt 9153760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 145 - 194
Target Start/End: Complemental strand, 11962904 - 11962855
Alignment:
Q  145 tcgttgctgacgtggaacccacatccgattagtgaagtgccacatgtatt 194  Q
    ||||||||||||||| ||||| |||| |||||||| ||||||| ||||||    
T  11962904 tcgttgctgacgtggcacccatatcccattagtgaggtgccacgtgtatt 11962855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 64 - 97
Target Start/End: Complemental strand, 31577734 - 31577701
Alignment:
Q  64 agacttaattgcacttttggactcctatcttttt 97  Q
    |||||||||||||||||||||| |||||||||||    
T  31577734 agacttaattgcacttttggacccctatcttttt 31577701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 96
Target Start/End: Original strand, 51336892 - 51336921
Alignment:
Q  67 cttaattgcacttttggactcctatctttt 96  Q
    ||||||||||||||||||||||||||||||    
T  51336892 cttaattgcacttttggactcctatctttt 51336921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 67 - 95
Target Start/End: Original strand, 36441484 - 36441512
Alignment:
Q  67 cttaattgcacttttggactcctatcttt 95  Q
    |||||||||||||||||||||||||||||    
T  36441484 cttaattgcacttttggactcctatcttt 36441512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 65 - 97
Target Start/End: Complemental strand, 41223826 - 41223794
Alignment:
Q  65 gacttaattgcacttttggactcctatcttttt 97  Q
    ||||||||||||||||||||| |||||||||||    
T  41223826 gacttaattgcacttttggacccctatcttttt 41223794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1171 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: scaffold1171
Description:

Target: scaffold1171; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 147 - 197
Target Start/End: Original strand, 954 - 1004
Alignment:
Q  147 gttgctgacgtggaacccacatccgattagtgaagtgccacatgtattatt 197  Q
    ||||| ||||||| |||||||||| |||||||| |||||||||||||||||    
T  954 gttgcggacgtggcacccacatcccattagtgaggtgccacatgtattatt 1004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1171; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 218 - 251
Target Start/End: Original strand, 1022 - 1055
Alignment:
Q  218 aattcatcctgttatttttaaattgaaataaatt 251  Q
    |||||||||||||||||||||||||||| |||||    
T  1022 aattcatcctgttatttttaaattgaaaaaaatt 1055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000007; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 145 - 194
Target Start/End: Complemental strand, 21004303 - 21004254
Alignment:
Q  145 tcgttgctgacgtggaacccacatccgattagtgaagtgccacatgtatt 194  Q
    ||||||||||||||| |||||||||| |||||||| ||||||| ||||||    
T  21004303 tcgttgctgacgtggcacccacatcccattagtgaggtgccacgtgtatt 21004254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 145 - 197
Target Start/End: Original strand, 21003502 - 21003554
Alignment:
Q  145 tcgttgctgacgtggaacccacatccgattagtgaagtgccacatgtattatt 197  Q
    ||||||||||||||  |||||||||| |||||||| ||||||| |||||||||    
T  21003502 tcgttgctgacgtgacacccacatcccattagtgaggtgccacgtgtattatt 21003554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 142 - 194
Target Start/End: Original strand, 28932080 - 28932132
Alignment:
Q  142 tggtcgttgctgacgtggaacccacatccgattagtgaagtgccacatgtatt 194  Q
    |||||||||||||||||| || ||||||| |||||||| ||||||| ||||||    
T  28932080 tggtcgttgctgacgtggcactcacatcccattagtgaggtgccacgtgtatt 28932132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 96
Target Start/End: Original strand, 15149729 - 15149758
Alignment:
Q  67 cttaattgcacttttggactcctatctttt 96  Q
    ||||||||||||||||||||||||||||||    
T  15149729 cttaattgcacttttggactcctatctttt 15149758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 64 - 96
Target Start/End: Original strand, 3195715 - 3195747
Alignment:
Q  64 agacttaattgcacttttggactcctatctttt 96  Q
    |||||||||||||||||||||| ||||||||||    
T  3195715 agacttaattgcacttttggacccctatctttt 3195747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 67 - 95
Target Start/End: Original strand, 22279501 - 22279529
Alignment:
Q  67 cttaattgcacttttggactcctatcttt 95  Q
    |||||||||||||||||||||||||||||    
T  22279501 cttaattgcacttttggactcctatcttt 22279529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 142 - 194
Target Start/End: Original strand, 30085752 - 30085804
Alignment:
Q  142 tggtcgttgctgacgtggaacccacatccgattagtgaagtgccacatgtatt 194  Q
    |||||||||||||||||| || ||||||| |||||||| ||||||| ||||||    
T  30085752 tggtcgttgctgacgtggcactcacatcccattagtgaggtgccacgtgtatt 30085804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 187
Target Start/End: Original strand, 10715969 - 10716014
Alignment:
Q  142 tggtcgttgctgacgtggaacccacatccgattagtgaagtgccac 187  Q
    |||||||||||||||||| || ||||||| |||||||| |||||||    
T  10715969 tggtcgttgctgacgtggcactcacatcccattagtgaggtgccac 10716014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 96
Target Start/End: Original strand, 16537079 - 16537108
Alignment:
Q  67 cttaattgcacttttggactcctatctttt 96  Q
    ||||||||||||||||||||||||||||||    
T  16537079 cttaattgcacttttggactcctatctttt 16537108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 96
Target Start/End: Complemental strand, 16628583 - 16628554
Alignment:
Q  67 cttaattgcacttttggactcctatctttt 96  Q
    ||||||||||||||||||||||||||||||    
T  16628583 cttaattgcacttttggactcctatctttt 16628554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 96
Target Start/End: Complemental strand, 30401219 - 30401190
Alignment:
Q  67 cttaattgcacttttggactcctatctttt 96  Q
    ||||||||||||||||||||||||||||||    
T  30401219 cttaattgcacttttggactcctatctttt 30401190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 96
Target Start/End: Complemental strand, 38053459 - 38053430
Alignment:
Q  67 cttaattgcacttttggactcctatctttt 96  Q
    ||||||||||||||||||||||||||||||    
T  38053459 cttaattgcacttttggactcctatctttt 38053430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 67 - 95
Target Start/End: Complemental strand, 10312538 - 10312510
Alignment:
Q  67 cttaattgcacttttggactcctatcttt 95  Q
    |||||||||||||||||||||||||||||    
T  10312538 cttaattgcacttttggactcctatcttt 10312510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 67 - 95
Target Start/End: Complemental strand, 18074126 - 18074098
Alignment:
Q  67 cttaattgcacttttggactcctatcttt 95  Q
    |||||||||||||||||||||||||||||    
T  18074126 cttaattgcacttttggactcctatcttt 18074098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0250 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0250
Description:

Target: scaffold0250; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 187
Target Start/End: Original strand, 21969 - 22014
Alignment:
Q  142 tggtcgttgctgacgtggaacccacatccgattagtgaagtgccac 187  Q
    |||||||||||||||||| || ||||||| |||||||| |||||||    
T  21969 tggtcgttgctgacgtggcactcacatcccattagtgaggtgccac 22014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0352 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0352
Description:

Target: scaffold0352; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 67 - 95
Target Start/End: Original strand, 9949 - 9977
Alignment:
Q  67 cttaattgcacttttggactcctatcttt 95  Q
    |||||||||||||||||||||||||||||    
T  9949 cttaattgcacttttggactcctatcttt 9977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0283 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0283
Description:

Target: scaffold0283; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 68 - 96
Target Start/End: Complemental strand, 1494 - 1466
Alignment:
Q  68 ttaattgcacttttggactcctatctttt 96  Q
    |||||||||||||||||||||||||||||    
T  1494 ttaattgcacttttggactcctatctttt 1466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 68 - 96
Target Start/End: Complemental strand, 75385 - 75357
Alignment:
Q  68 ttaattgcacttttggactcctatctttt 96  Q
    |||||||||||||||||||||||||||||    
T  75385 ttaattgcacttttggactcctatctttt 75357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 67 - 95
Target Start/End: Original strand, 8986612 - 8986640
Alignment:
Q  67 cttaattgcacttttggactcctatcttt 95  Q
    |||||||||||||||||||||||||||||    
T  8986612 cttaattgcacttttggactcctatcttt 8986640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 67 - 95
Target Start/End: Complemental strand, 16079489 - 16079461
Alignment:
Q  67 cttaattgcacttttggactcctatcttt 95  Q
    |||||||||||||||||||||||||||||    
T  16079489 cttaattgcacttttggactcctatcttt 16079461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 67 - 95
Target Start/End: Complemental strand, 21583634 - 21583606
Alignment:
Q  67 cttaattgcacttttggactcctatcttt 95  Q
    |||||||||||||||||||||||||||||    
T  21583634 cttaattgcacttttggactcctatcttt 21583606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 64 - 96
Target Start/End: Original strand, 40767887 - 40767919
Alignment:
Q  64 agacttaattgcacttttggactcctatctttt 96  Q
    |||||||||||||||||||||| ||||||||||    
T  40767887 agacttaattgcacttttggacccctatctttt 40767919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 67 - 95
Target Start/End: Original strand, 42947403 - 42947431
Alignment:
Q  67 cttaattgcacttttggactcctatcttt 95  Q
    |||||||||||||||||||||||||||||    
T  42947403 cttaattgcacttttggactcctatcttt 42947431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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