View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11379_low_26 (Length: 427)
Name: NF11379_low_26
Description: NF11379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11379_low_26 |
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Alignment Details
Target: chr4 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 21 - 414
Target Start/End: Complemental strand, 23658847 - 23658445
Alignment:
| Q |
21 |
taataaattaatattaagaataggggtgttacactatacacttacaaagaatggtttgtaactattattatatgaatgaatgtttaattaaatttgtaat |
120 |
Q |
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| T |
23658847 |
taataaattaatattaagaataggggtgttacactatacacttacaaagaatggtttgtaactattattatatgaatgaatgtttaattaaatttgtaat |
23658748 |
T |
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| Q |
121 |
agcttgatatttattgttggagatatttgacatgaataggaacccacatgttatgagctttacaagcggcttcatagaccaaggggtaaccgaatggttc |
220 |
Q |
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| T |
23658747 |
agcttgatatttattgttggagatatttgacatgaataggaacccacatgttatgagctttacaagcggcttcatagaccaaggggtaaccgaatggttc |
23658648 |
T |
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| Q |
221 |
aatgaaaatcaagcaaagattgttgtgag---------tatcttaaagtaattaattatgttttttcttttaaatcaagatacatgaaaccacaattaca |
311 |
Q |
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| T |
23658647 |
aatgaaaatcaagcaaagattgttgtaagtatatgtgttatcttaaagtaattaattatgttttttcttttaaatcaagatacatgaaaccacaattaca |
23658548 |
T |
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| Q |
312 |
gagaaattgtacaaattctaattgtcatatccacctttatctttctttgaagtttgacaataacatgattttctcaattaaatatgttgagtttttatca |
411 |
Q |
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| T |
23658547 |
gagaaattgtacaaattctaattatcatatccacctttatctttctttgaagtttgacaataacatgattttctcaattaaatatgttgagtttttatca |
23658448 |
T |
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| Q |
412 |
tct |
414 |
Q |
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| T |
23658447 |
tct |
23658445 |
T |
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