View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11379_low_27 (Length: 426)
Name: NF11379_low_27
Description: NF11379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11379_low_27 |
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Alignment Details
Target: chr2 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 22 - 411
Target Start/End: Original strand, 36458113 - 36458485
Alignment:
| Q |
22 |
catgccattggttggataataggctttcactttatgtggctctctatttcattcaagtttctaattcatgataagctttagagaaactaaagtagtaata |
121 |
Q |
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| T |
36458113 |
catgccattggttggataataggctttcactttatgtggctctctatttca-----------------tgataagctttagagaaactaaagtagtaata |
36458195 |
T |
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| Q |
122 |
tagacattaaagtaataacgttgattccaaaacaaagaataccaatatatttttacaattttctttttctaatcctaaactgtcacttctaaaccaaata |
221 |
Q |
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| T |
36458196 |
tagacattaaagtaataacgttgattccaaaacaaagaataccaatatatttttacaattttctttttctaatcctaaactgtcacttctaacccaaata |
36458295 |
T |
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| Q |
222 |
acacccctgcgtgcatagtgattccattgttgacaaaataaatgtccttcatcttcttaaaagcttgccatgtcaacaaactatctgacgcggcttgatg |
321 |
Q |
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| T |
36458296 |
acacccctgcgtgcatagtgattccattgttgacaaaataaatgtccttcatcttcttaaaagcttgccatgtcaacaaactatctgacgcggcttgatg |
36458395 |
T |
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| Q |
322 |
agagtttccgaccgcccggctgaccttgagtttagtggcaacacgttccagaccaccatataagttgcagaatttgatcatatacttcat |
411 |
Q |
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| T |
36458396 |
agagtttccgaccgcccggctgaccttgagtttagtggcaacacgttccagaccaccatataagttgcagaatttgatcatatacttcat |
36458485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 256 - 330
Target Start/End: Original strand, 40874742 - 40874816
Alignment:
| Q |
256 |
aaaataaatgtccttcatcttcttaaaagcttgccatgtcaacaaactatctgacgcggcttgatgagagtttcc |
330 |
Q |
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| T |
40874742 |
aaaataagtatccatcattttcttaaatgcatgccacgtcaacaaactatctgatccagcttgatgagactttcc |
40874816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 270 - 330
Target Start/End: Original strand, 40871658 - 40871718
Alignment:
| Q |
270 |
tcatcttcttaaaagcttgccatgtcaacaaactatctgacgcggcttgatgagagtttcc |
330 |
Q |
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| T |
40871658 |
tcattttcttaaatgcatgccatgtcaacaaactatctgatccagcttgatgcgactttcc |
40871718 |
T |
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