View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11379_low_28 (Length: 410)
Name: NF11379_low_28
Description: NF11379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11379_low_28 |
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| [»] chr5 (3 HSPs) |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 369; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 14 - 410
Target Start/End: Complemental strand, 42060203 - 42059807
Alignment:
| Q |
14 |
agacatcataagattgaagtgaaaaatagagcaacacagccatgaaagcaataccagcatccaaagcagctgagagaatgtaagtgtgtctagcccacca |
113 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42060203 |
agacatcataagattgaagtgaaaaatagagcaacacagccatgaaagcaataccagcatccaaagcagctgagagaatgtaagtgtgtctagcccacca |
42060104 |
T |
|
| Q |
114 |
tgccttgaaatttttgtaaacatagaaattgaagaagattccaactactccccatgaaatataattgattgatctagctggtggtataccactggcacct |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42060103 |
tgccttgaaatttttgtaaacatagaaattgaagaagattccaactactccccatgaaatataattgattgatctagctggtggtataccactggcacct |
42060004 |
T |
|
| Q |
214 |
ccaatgataagtggcatgttgatgagttcaatccacttgtggttcgggtatttgcgagctagaagccacactggaacaggcgcaagtagaccgatgagga |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42060003 |
ccaatgataagtggcatgttgatgagttcaatccacttgtggttcgggtatttgcgagctagaagccacactggaacaggcgcaagtagaccgatgagga |
42059904 |
T |
|
| Q |
314 |
aaaaccaattcactcgagggtaaattccatccatggtaaacatcctttgtggtcatactactcgacatatgattgaagcattgtaacacacatcatc |
410 |
Q |
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|||||||||||| || |||||||||||||||| ||||||||||||||||||||| |||||||| ||||||||||||||||||||| |||||||||| |
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| T |
42059903 |
aaaaccaattcattccagggtaaattccatccttggtaaacatcctttgtggtcctactactccccatatgattgaagcattgtaaaacacatcatc |
42059807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 18 - 399
Target Start/End: Complemental strand, 42084076 - 42083695
Alignment:
| Q |
18 |
atcataagattgaagtgaaaaatagagcaacacagccatgaaagcaataccagcatccaaagcagctgagagaatgtaagtgtgtctagcccaccatgcc |
117 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42084076 |
atcataagattgaagtgcaaaatagagcaacacagccatgaaagcaacaccagcatccaaagcagctgagagaatgtaagtgtgtctagcccaccatgcc |
42083977 |
T |
|
| Q |
118 |
ttgaaatttttgtaaacatagaaattgaagaagattccaactactccccatgaaatataattgattgatctagctggtggtataccactggcacctccaa |
217 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |
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| T |
42083976 |
ttgaaatttttgtaaacatagaaattgaagaagattccaacaactccccatgaaatataattgattgacctagctggtggtataccactagcacctccaa |
42083877 |
T |
|
| Q |
218 |
tgataagtggcatgttgatgagttcaatccacttgtggttcgggtatttgcgagctagaagccacactggaacaggcgcaagtagaccgatgaggaaaaa |
317 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| |
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| T |
42083876 |
ttataagtggcatgttgatgagttcaatccacttgtggttcgggtatttgcgagctagaaaccacaccggaacaggcgcaagtagaccgatgaggaaaaa |
42083777 |
T |
|
| Q |
318 |
ccaattcactcgagggtaaattccatccatggtaaacatcctttgtggtcatactactcgacatatgattgaagcattgtaa |
399 |
Q |
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|||||||| || |||||| ||||||||| |||| |||||||||| ||||| ||||| || ||||||||||||||||||||| |
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| T |
42083776 |
ccaattcattccagggtatattccatccttggtgaacatcctttttggtcctactattccccatatgattgaagcattgtaa |
42083695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 20 - 399
Target Start/End: Complemental strand, 42075494 - 42075115
Alignment:
| Q |
20 |
cataagattgaagtgaaaaatagagcaacacagccatgaaagcaataccagcatccaaagcagctgagagaatgtaagtgtgtctagcccaccatgcctt |
119 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
42075494 |
cataagattgaagtagaaaatagagcaacacagccatgaaagcaacaccagcatccaaagcagctgagagaatgtaagtgtgtctagcccaccatacctt |
42075395 |
T |
|
| Q |
120 |
gaaatttttgtaaacatagaaattgaagaagattccaactactccccatgaaatataattgattgatctagctggtggtataccactggcacctccaatg |
219 |
Q |
| |
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||| |||||||||||||||| |||||||||||||||||| |||||||||||||| ||| ||||||||||||||||||||||||| |||| ||| ||||| |
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| T |
42075394 |
gaattttttgtaaacatagatattgaagaagattccaacaactccccatgaaatgtaactgattgatctagctggtggtatacctttggcccctgcaatg |
42075295 |
T |
|
| Q |
220 |
ataagtggcatgttgatgagttcaatccacttgtggttcgggtatttgcgagctagaagccacactggaacaggcgcaagtagaccgatgaggaaaaacc |
319 |
Q |
| |
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|||| ||||||||||| ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42075294 |
ataattggcatgttgacgagttcaatccactttcggtttgggtatttgcgagctagaagccacactggaacaggcgcaagtagaccgatgaggaaaaacc |
42075195 |
T |
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| Q |
320 |
aattcactcgagggtaaattccatccatggtaaacatcctttgtggtcatactactcgacatatgattgaagcattgtaa |
399 |
Q |
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|||||| || |||||| ||||||||| |||| |||||||||| ||||| ||||| || ||||||||||||||||||||| |
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| T |
42075194 |
aattcaatccagggtatattccatccttggtgaacatcctttttggtcctactattccccatatgattgaagcattgtaa |
42075115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 72; Significance: 1e-32; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 67 - 410
Target Start/End: Original strand, 36530071 - 36530414
Alignment:
| Q |
67 |
ccagcatccaaagcagctgagagaatgtaagtgtgtctagcccaccatgccttgaaatttttgtaaacatagaaattgaagaagattccaactactcccc |
166 |
Q |
| |
|
|||||||| ||| ||||||| || |||||||| ||||||||||||||||| ||||| ||| | ||||||||||||||||| || |||||||| | |||| |
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| T |
36530071 |
ccagcatctaaaccagctgaaaggatgtaagtatgtctagcccaccatgctttgaactttctataaacatagaaattgaaaaatattccaacaatccccc |
36530170 |
T |
|
| Q |
167 |
atgaaatataattgattgatctagctggtggtataccactggcacctccaatgataagtggcatgttgatgagttcaatccacttgtggttcgggtattt |
266 |
Q |
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| | ||||||||| | ||||| | ||||| || || |||||| ||||||||| || |||||||||| || ||||||||| ||||| || |||| |
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| T |
36530171 |
aagtaatataattcacagatctcacaggtgggatgtcagatgcacctgcaatgataataggaatgttgatgaattgaatccacttttggttgggaaattt |
36530270 |
T |
|
| Q |
267 |
gcgagctagaagccacactggaacaggcgcaagtagaccgatgaggaaaaaccaattcactcgagggtaaattccatccatggtaaacatcctttgtggt |
366 |
Q |
| |
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| ||| ||||||||||| ||||| || || | ||||||||| |||||||||||||||| | || |||| || || |||||||||| || | ||| |
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| T |
36530271 |
gagagaaagaagccacacgggaactggtgcgattagaccgataaggaaaaaccaattcaattcgggataaacaccgtctttggtaaacattctctttggc |
36530370 |
T |
|
| Q |
367 |
catactactcgacatatgattgaagcattgtaacacacatcatc |
410 |
Q |
| |
|
| ||| |||| || |||||||||||||||||| | |||||||| |
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|
| T |
36530371 |
cctacaactccccagatgattgaagcattgtaaaatacatcatc |
36530414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 67 - 410
Target Start/End: Original strand, 36523238 - 36523581
Alignment:
| Q |
67 |
ccagcatccaaagcagctgagagaatgtaagtgtgtctagcccaccatgccttgaaatttttgtaaacatagaaattgaagaagattccaactactcccc |
166 |
Q |
| |
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|||||||| ||| |||| || || || ||||| ||||||||||||||||||||||| ||| | ||||||||||||||||| | |||||||| | ||||| |
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| T |
36523238 |
ccagcatctaaaccagcagaaaggatataagtatgtctagcccaccatgccttgaactttctataaacatagaaattgaaaaccattccaacaattcccc |
36523337 |
T |
|
| Q |
167 |
atgaaatataattgattgatctagctggtggtataccactggcacctccaatgataagtggcatgttgatgagttcaatccacttgtggttcgggtattt |
266 |
Q |
| |
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| | ||| ||||| | ||||| ||||||| || ||| |||||| | ||||| || ||||| ||||||| ||||||||| ||||| | |||| |
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|
| T |
36523338 |
aagtaatgtaattcacagatctcactggtggaatgccagatgcacctgcggcgataataggaatgttaatgagttgaatccacttttggttacgaaattt |
36523437 |
T |
|
| Q |
267 |
gcgagctagaagccacactggaacaggcgcaagtagaccgatgaggaaaaaccaattca-ctcgagggtaaattccatccatggtaaacatcctttgtgg |
365 |
Q |
| |
|
| ||| |||||||||||||||||||| ||||||||||| || |||||||||||||||| ||| ||| |||| || || |||||||||| || | ||| |
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| T |
36523438 |
gagagaaagaagccacactggaacaggtgcaagtagaccaataaggaaaaaccaattcatctc-aggataaacgccgtctttggtaaacattctctttgg |
36523536 |
T |
|
| Q |
366 |
tcatactactcgacatatgattgaagcattgtaacacacatcatc |
410 |
Q |
| |
|
| ||| |||| || |||||||||||||||||| | |||||||| |
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| T |
36523537 |
ccctacaactccccagatgattgaagcattgtaaaatacatcatc |
36523581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 20 - 325
Target Start/End: Original strand, 36535636 - 36535941
Alignment:
| Q |
20 |
cataagattgaagtgaaaaatagagcaacacagccatgaaagcaataccagcatccaaagcagctgagagaatgtaagtgtgtctagcccaccatgcctt |
119 |
Q |
| |
|
|||| |||||||| |||||||| || | | | |||| ||||||| |||||||| ||| ||||||||||||| ||||| |||||||||||||| | | |
|
|
| T |
36535636 |
cataggattgaagagaaaaataaagtactaaacccataaaagcaactccagcatctaaaccagctgagagaatataagtatgtctagcccaccaaactct |
36535735 |
T |
|
| Q |
120 |
gaaatttttgtaaacatagaaattgaagaagattccaactactccccatgaaatataattgattgatctagctggtggtataccactggcacctccaatg |
219 |
Q |
| |
|
||| ||| | ||||||||||||||||| || |||||||| | |||||| | ||||||||| | ||||| || || ||| | |||||| ||||| |
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| T |
36535736 |
gaactttctataaacatagaaattgaaaaacattccaacaattccccaagtaatataattcacagatctcctgggaggaatagtagatgcacctacaatg |
36535835 |
T |
|
| Q |
220 |
ataagtggcatgttgatgagttcaatccacttgtggttcgggtatttgcgagctagaagccacactggaacaggcgcaagtagaccgatgaggaaaaacc |
319 |
Q |
| |
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|||| || |||||||| |||| ||||||||||||||| || ||||| || ||||||||||| || ||||| |||| ||| || || |||||||||| |
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| T |
36535836 |
ataataggaatgttgataagtttaatccacttgtggttaggaaatttgatagaaagaagccacaccggtacaggtgcaattaggccaataaggaaaaacc |
36535935 |
T |
|
| Q |
320 |
aattca |
325 |
Q |
| |
|
|||||| |
|
|
| T |
36535936 |
aattca |
36535941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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