View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11379_low_30 (Length: 405)
Name: NF11379_low_30
Description: NF11379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11379_low_30 |
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Alignment Details
Target: chr7 (Bit Score: 328; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 18 - 392
Target Start/End: Complemental strand, 356904 - 356525
Alignment:
| Q |
18 |
gaatccgcaggattagcttgtgtgatatgttttttctgctttttggtgaccaaaacagtgttgggagtttcctatgtttgaatattattttggtctccct |
117 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |
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| T |
356904 |
gaatccgcatgattagcttgtgtgatatgttttttctgctttttggtgaccaaaacagtgttgggagtttcctgtgtttaaatattattttggtctccct |
356805 |
T |
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| Q |
118 |
ccctctactaaatctccccataaagcctttaaaatgttctcactcttctgaaaggctacattaggtttgaaagataaagcaacatgggaggaactcacaa |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| |
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| T |
356804 |
ccctctactaaatctccccataaagcctttaaaatgttctcactcttctgaaaggcttcattaggtttgaaagataaagcaacgtgggaggaactcacaa |
356705 |
T |
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| Q |
218 |
gccttttatcagaggtcaatgacatggcagtgcaggcaataggtgcctccattgatacaacattgctggctggtaaagacatcctccttgaaacaccaat |
317 |
Q |
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| T |
356704 |
gccttttattagaggtcaatgacatggcagtgcaggcaatagttgcctccattgatacaacattgctggctggtaaagacatcctccttgaaacaccaat |
356605 |
T |
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| Q |
318 |
ctggaaagccct-----ggtgtctctaaggacactattttcctgattcaactcctcatttgacaaaatcaaatttgtcct |
392 |
Q |
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| T |
356604 |
ctgcaaagccctggtggggtgtctctaaggacactattttcctgattcaactcctcatttgacaaaatcaaatttgtcct |
356525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 18 - 393
Target Start/End: Complemental strand, 10582930 - 10582551
Alignment:
| Q |
18 |
gaatccgcaggattagcttgtgtgatatgttttttctgctttttggtgaccaaaacagtgttgggagtttcctatgtttgaatattattttggtctccct |
117 |
Q |
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| T |
10582930 |
gaatccgcaggattagcttgtgtgatgtgattttactgctttttggtgaccaaaacagtgttaggagtttcctgtgtttgaatattattttggtctccct |
10582831 |
T |
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| Q |
118 |
ccctctactaaatctccccataaagcctttaaaatgttctcactcttctgaaaggctacattaggtttgaaagataaagcaacatgggaggaactcacaa |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| ||||| ||| |
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| T |
10582830 |
ccctctactaaatctccccataaagcctttaaaatgttctcactcttctgaaaggcttcattaggcgtgaaagataaagcaacatgggaagaacttacag |
10582731 |
T |
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| Q |
218 |
gccttttatcagaggtcaatgacatggcagtgcaggcaataggtgcctccattgatacaacattgctgg----ctggtaaagacatcctccttgaaacac |
313 |
Q |
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| T |
10582730 |
gccttttatcagaggtcaatgacatggcagtgcaggaaataggtgccgccgttgatacaatattgctggctggctggtaaagacatcctccctgaaacac |
10582631 |
T |
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| Q |
314 |
caatctggaaagccctggtgtctctaaggacactattttcctgattcaactcctcatttgacaaaatcaaatttgtcctt |
393 |
Q |
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||||||| ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||| ||||| |
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| T |
10582630 |
caatctgcaaagccctggtgtctctaatgacactattttcctgatacaactcctcatttgacaaaactaaatttctcctt |
10582551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 18 - 79
Target Start/End: Complemental strand, 38984503 - 38984442
Alignment:
| Q |
18 |
gaatccgcaggattagcttgtgtgatatgttttttctgctttttggtgaccaaaacagtgtt |
79 |
Q |
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||||||||||||||||||||||||||||||||| | || | ||| | |||||| |||||||| |
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| T |
38984503 |
gaatccgcaggattagcttgtgtgatatgttttctatgttgtttagagaccaagacagtgtt |
38984442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 18 - 85
Target Start/End: Complemental strand, 16465535 - 16465468
Alignment:
| Q |
18 |
gaatccgcaggattagcttgtgtgatatgttttttctgctttttggtgaccaaaacagtgttgggagt |
85 |
Q |
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|||||||| |||| ||||||||||||||| ||||||||| ||||| |||||| | |||||| ||||| |
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| T |
16465535 |
gaatccgcctgattcgcttgtgtgatatgtcttttctgctgtttggagaccaagatagtgtttggagt |
16465468 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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