View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11379_low_31 (Length: 402)
Name: NF11379_low_31
Description: NF11379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11379_low_31 |
 | |
|
| [»] scaffold0648 (3 HSPs) |
| | |
|
| [»] scaffold0271 (3 HSPs) |
| | |
|
| [»] scaffold0274 (3 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 318; Significance: 1e-179; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 385
Target Start/End: Complemental strand, 41415546 - 41415163
Alignment:
| Q |
1 |
gacaattacaactgtaataataatttgagaaaatgtcataaatccattaaatcacatgtgttgctatgctatggcatgtagacacgccttccatcaaaag |
100 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
41415546 |
gacaactacaactgtaataataatttgagaaaatgtcataaatccattaaatcacatgtgttgctatgctatggcatgtagacacgccttccat---aag |
41415450 |
T |
|
| Q |
101 |
tgttattcaaatgttaagtaagtagctgaatacaatcagtagtatactatactactatcataagaagaatttaaaccaaaatataaaaccataaatccgc |
200 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41415449 |
tgttattcaaatgttaaataagtagctgaatacaatcagtagtatactatactactatcataagaagaatttaaaccaaaatataaaaccataaatccgc |
41415350 |
T |
|
| Q |
201 |
tgaaatttttataatttgaactaaataagcattctataattccaac--nnnnnnnnnnnntcatcattatcatgatcctataacaattcttattattatt |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41415349 |
tgaaatttttataatttgaactaaataagcattctataattccaacaaaaacaaaaaaaatcatcattatcatgatcctataacaattcttattattatt |
41415250 |
T |
|
| Q |
299 |
tcaaagaattaccgattaatctcaaacattgaatccttcagcacgaagacaaattcgatgagcttcaatccacttggcacaagcatc |
385 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41415249 |
tcaaagaattaccgattaatctcaaacattgaatccttcagcacgaagacaaattcgatgagcttcaatccacttggcacaagcatc |
41415163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 156 - 245
Target Start/End: Complemental strand, 41417042 - 41416957
Alignment:
| Q |
156 |
tatcataagaagaatttaaaccaaaatataaaaccataaatccgctgaaatttttataatttgaactaaataagcattctataattccaa |
245 |
Q |
| |
|
||||||| |||||| || |||||| |||||| ||||||||||||||||||||| ||||||||||||| || |||||||||||||||| |
|
|
| T |
41417042 |
tatcatacgaagaactttaaccaagatataag-ccataaatccgctgaaatttt---aatttgaactaaacaaccattctataattccaa |
41416957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0648 (Bit Score: 97; Significance: 1e-47; HSPs: 3)
Name: scaffold0648
Description:
Target: scaffold0648; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 259 - 385
Target Start/End: Original strand, 501 - 624
Alignment:
| Q |
259 |
tcatcattatcatgatcctataacaattcttattattatttcaaagaattaccgattaatctcaaacattgaatccttcagcacgaagacaaattcgatg |
358 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| | ||||||||||| ||| |||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
501 |
tcatcattatcatgatcctataacaattcttattattatcttaaagaattaccaatt---ctcaaacattgaatccctcagcacgaagacaaattcgatg |
597 |
T |
|
| Q |
359 |
agcttcaatccacttggcacaagcatc |
385 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
598 |
agcttcaatccacttggcacaagcatc |
624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0648; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 189 - 245
Target Start/End: Complemental strand, 4842 - 4789
Alignment:
| Q |
189 |
ccataaatccgctgaaatttttataatttgaactaaataagcattctataattccaa |
245 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| || |||||||| ||||||| |
|
|
| T |
4842 |
ccataaatccgctgaaatttt---aatttgaactaaacaaccattctatcattccaa |
4789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0648; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 81 - 117
Target Start/End: Original strand, 279 - 315
Alignment:
| Q |
81 |
gacacgccttccatcaaaagtgttattcaaatgttaa |
117 |
Q |
| |
|
||||||||||| ||||||||||||||||| ||||||| |
|
|
| T |
279 |
gacacgccttctatcaaaagtgttattcagatgttaa |
315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0271 (Bit Score: 97; Significance: 1e-47; HSPs: 3)
Name: scaffold0271
Description:
Target: scaffold0271; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 259 - 385
Target Start/End: Original strand, 14881 - 15004
Alignment:
| Q |
259 |
tcatcattatcatgatcctataacaattcttattattatttcaaagaattaccgattaatctcaaacattgaatccttcagcacgaagacaaattcgatg |
358 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| | ||||||||||| ||| |||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
14881 |
tcatcattatcatgatcctataacaattcttattattatcttaaagaattaccaatt---ctcaaacattgaatccctcagcacgaagacaaattcgatg |
14977 |
T |
|
| Q |
359 |
agcttcaatccacttggcacaagcatc |
385 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
14978 |
agcttcaatccacttggcacaagcatc |
15004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0271; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 189 - 245
Target Start/End: Original strand, 12826 - 12879
Alignment:
| Q |
189 |
ccataaatccgctgaaatttttataatttgaactaaataagcattctataattccaa |
245 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| || |||||||| ||||||| |
|
|
| T |
12826 |
ccataaatccgctgaaatttt---aatttgaactaaacaaccattctatcattccaa |
12879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0271; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 81 - 117
Target Start/End: Original strand, 14660 - 14696
Alignment:
| Q |
81 |
gacacgccttccatcaaaagtgttattcaaatgttaa |
117 |
Q |
| |
|
||||||||||| ||||||||||||||||| ||||||| |
|
|
| T |
14660 |
gacacgccttctatcaaaagtgttattcagatgttaa |
14696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0274 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: scaffold0274
Description:
Target: scaffold0274; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 189 - 245
Target Start/End: Complemental strand, 1246 - 1192
Alignment:
| Q |
189 |
ccataaatccgctgaaatttttataatttgaactaaataagcattctataattccaa |
245 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| || |||||||| ||||||| |
|
|
| T |
1246 |
ccataaatccgctgaaatttt--taatttgaactaaacaaccattctatcattccaa |
1192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0274; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 189 - 245
Target Start/End: Complemental strand, 4312 - 4259
Alignment:
| Q |
189 |
ccataaatccgctgaaatttttataatttgaactaaataagcattctataattccaa |
245 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| || |||||||| ||||||| |
|
|
| T |
4312 |
ccataaatccgctgaaatttt---aatttgaactaaacaaccattctatcattccaa |
4259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0274; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 189 - 245
Target Start/End: Original strand, 22909 - 22962
Alignment:
| Q |
189 |
ccataaatccgctgaaatttttataatttgaactaaataagcattctataattccaa |
245 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| || |||||||| ||||||| |
|
|
| T |
22909 |
ccataaatccgctgaaatttt---aatttgaactaaacaaccattctatcattccaa |
22962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University