View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11379_low_32 (Length: 401)
Name: NF11379_low_32
Description: NF11379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11379_low_32 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 12 - 383
Target Start/End: Complemental strand, 54264253 - 54263883
Alignment:
| Q |
12 |
agcaaaggacaaaaagcccaccccctcacaaactactactcaaccctccacaaaatgaaaaccaataagcaatcagaccgatatccctttagccaccact |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
54264253 |
agcaaaggacaaaaagcccaccccctcacaaactactactcaaccctccacaaaatgaaaacca-taagcaatcagaccgatatccctttagccaccact |
54264155 |
T |
|
| Q |
112 |
tccactctgcatgcaagcaacccaactccgcaggaaacaacggatcacacctttgcaagccaaacttccacacattgctagaaaactcagcctaccacat |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |
|
|
| T |
54264154 |
tccactctgcatgcaagcaacccaactccgcaggaaacaacggatcacacctttgcaagccaaactcccacatattgctagaaaactcagcctaccacat |
54264055 |
T |
|
| Q |
212 |
ctgtagatgagaattccaacacaaaacaaccaaagttgtccgagcaagtgtgatgcgccgacaaaacatgggaactctgcataacagaaccccgtagcag |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
54264054 |
ctgtagatgagaattccaacacaaaacaaccaaagttgtccgagcaagtgtgatgcgccaacaaaacacgggaattctgcataacagaaccccgtagcag |
54263955 |
T |
|
| Q |
312 |
attgaaaagaaccataatgcagtcatactcctaccaaatgcctcctctcaacatccaatagacacttgaaac |
383 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
54263954 |
attgaaaagaaccataatgcagtcatactcctaccagatgcctcctctcaacatccaatagacacttgaaac |
54263883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University