View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11379_low_33 (Length: 397)
Name: NF11379_low_33
Description: NF11379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11379_low_33 |
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Alignment Details
Target: chr5 (Bit Score: 357; Significance: 0; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 1 - 381
Target Start/End: Original strand, 1162728 - 1163107
Alignment:
| Q |
1 |
catgagtttgattctaacagtagcaattggcaccatgcttcagcaaatgaaagaaaggacgcatatgagaagcagccacactatactttaatctatttat |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1162728 |
catgagtttgattctaacagtagcaattggcaccatgcttcagcaaatgaaagaaaggacgcatatgagaagcagccacactatactttaatctatttat |
1162827 |
T |
|
| Q |
101 |
gtagagttgaaaatctcctaataattataaagatggtttgccagttttgcttcgtacgataggtattagattaatcaaaactcaagtacaaatggagtga |
200 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1162828 |
gtagagttgaaaatctcctaataattataaagatagtttgccagttttgcttcgtatgataggtattagattaatcaaaactcaagtacaaatggagtga |
1162927 |
T |
|
| Q |
201 |
actatttgtttataacaaacaatataataaaaacagatccacaaaatatttacatccatccagcacatgaatgaatcccatgtaaaaggtagtactatac |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |||||||||||||||||| |
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| T |
1162928 |
actatttgtttataacaaacaatataataaaaacagatccacaaaatatttacatccatccagcacatgaacgaat-ccatataaaaggtagtactatac |
1163026 |
T |
|
| Q |
301 |
cacaaacaaacaactgtttaaaatttacgaaacagatatttacatagcagagaagatcaaaccaatgcatattagctgctt |
381 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1163027 |
cacaaacaaacaactgtttaaaatttacgaaacagatatttacatagcagagaagatcaaaccaatgcatattagctgctt |
1163107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 16 - 214
Target Start/End: Complemental strand, 40412460 - 40412251
Alignment:
| Q |
16 |
aacagtagcaattggcacc---atgcttcagcaaatgaaagaaaggacgcatatgagaagcagccacactatactttaatctatttatgtagagttgaa- |
111 |
Q |
| |
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|||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| | ||||||||||| |||| || |
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| T |
40412460 |
aacagtagcagttggcaccgccatgcttcagcaaatgaaagaaaggacatgtatgagaagcagccacactatactttcaactatttatgtaaagttaaat |
40412361 |
T |
|
| Q |
112 |
-------------aatctcctaataattataaagatggtttgccagttttgcttcgtacgataggtattagattaatcaaaactcaagtacaaatggagt |
198 |
Q |
| |
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||||||||||||| ||||||||||||||||||||||| ||||||| || ||||||||||| |||||||| |||||| |||| |
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| T |
40412360 |
agagtagtagattaatctcctaataa------agatggtttgccagttttgcttcttacgatacttagtagattaatcagaactcaagaacaaatagagt |
40412267 |
T |
|
| Q |
199 |
gaactatttgtttata |
214 |
Q |
| |
|
||||||||| |||||| |
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| T |
40412266 |
gaactatttatttata |
40412251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 16 - 100
Target Start/End: Complemental strand, 39400847 - 39400763
Alignment:
| Q |
16 |
aacagtagcaattggcaccatgcttcagcaaatgaaagaaaggacgcatatgagaagcagccacactatactttaatctatttat |
100 |
Q |
| |
|
|||| ||||| |||| |||||||||||||||||||||||||||| |||| |||||||||||||||| ||||||| | |||||||| |
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|
| T |
39400847 |
aacattagcagttggaaccatgcttcagcaaatgaaagaaaggaggcatgtgagaagcagccacacaatactttcaactatttat |
39400763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 306 - 381
Target Start/End: Complemental strand, 40419069 - 40418994
Alignment:
| Q |
306 |
acaaacaactgtttaaaatttacgaaacagatatttacatagcagagaagatcaaaccaatgcatattagctgctt |
381 |
Q |
| |
|
||||| ||||||| || ||||| ||||||||||||||| |||||||||||||| |||||||||||||||||||||| |
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|
| T |
40419069 |
acaaataactgttaaagatttatgaaacagatatttacgtagcagagaagatcgaaccaatgcatattagctgctt |
40418994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 133 - 227
Target Start/End: Complemental strand, 39400746 - 39400652
Alignment:
| Q |
133 |
atggtttgccagttttgcttcgtacgataggtattagattaatcaaaactcaagtacaaatggagtgaactatttgtttataacaaacaatataa |
227 |
Q |
| |
|
||||||||| ||||||||||| ||| ||| | | |||||||||||| |||||||| |||| |||||||| |||| ||||||||||||||||||| |
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|
| T |
39400746 |
atggtttgctagttttgcttcttacaatacgcaagagattaatcaaagctcaagtagaaatagagtgaaccatttatttataacaaacaatataa |
39400652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 31 - 82
Target Start/End: Complemental strand, 40419340 - 40419289
Alignment:
| Q |
31 |
caccatgcttcagcaaatgaaagaaaggacgcatatgagaagcagccacact |
82 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||| ||||||||| ||||| |
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|
| T |
40419340 |
caccatgcttcagcgaatgaaagaaaggacgcatattagaagcagcaacact |
40419289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 212
Target Start/End: Complemental strand, 38988459 - 38988414
Alignment:
| Q |
167 |
tagattaatcaaaactcaagtacaaatggagtgaactatttgttta |
212 |
Q |
| |
|
||||||||||| |||||||| |||||| ||||||||||||| |||| |
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|
| T |
38988459 |
tagattaatcagaactcaagaacaaatagagtgaactatttattta |
38988414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 338 - 375
Target Start/End: Complemental strand, 39400549 - 39400512
Alignment:
| Q |
338 |
atttacatagcagagaagatcaaaccaatgcatattag |
375 |
Q |
| |
|
|||||||||||| |||| |||||||||||||||||||| |
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|
| T |
39400549 |
atttacatagcatagaaaatcaaaccaatgcatattag |
39400512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 127 - 207
Target Start/End: Complemental strand, 40419225 - 40419145
Alignment:
| Q |
127 |
ataaagatggtttgccagttttgcttcgtacgataggtattagattaatcaaaactcaagtacaaatggagtgaactattt |
207 |
Q |
| |
|
||||||||||||||| |||||| |||| || || ||| ||||||||||||| ||||||| |||| |||| |||||||| |
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|
| T |
40419225 |
ataaagatggtttgctagttttacttcttagtgtatgtaatagattaatcaaagctcaagtccaaaaagagtaaactattt |
40419145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 227 - 381
Target Start/End: Original strand, 25911483 - 25911628
Alignment:
| Q |
227 |
ataaaaacagatccacaaaatatttacatccatccagcacatgaatgaatcccatgtaaaaggtagtactataccacaaacaaacaactgtttaaaattt |
326 |
Q |
| |
|
|||| ||||||||| |||||||||| | |||||||||| |||||||||| || ||||||||| ||| |||| |||| ||||||||| || |||| |
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|
| T |
25911483 |
ataataacagatccccaaaatattt----caatccagcacaggaatgaatcc-atataaaaggtaatacgatactacaa----acaactgttaaagattt |
25911573 |
T |
|
| Q |
327 |
acgaaacagatatttacatagcagagaagatcaaaccaatgcatattagctgctt |
381 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
25911574 |
atgaaacagatatttacatagcagagaagatcaaaccaatgtatattagctgctt |
25911628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 17 - 104
Target Start/End: Original strand, 25911269 - 25911356
Alignment:
| Q |
17 |
acagtagcaattggcaccatgcttcagcaaatgaaagaaaggacgcatatgagaagcagccacactatactttaatctatttatgtag |
104 |
Q |
| |
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||||||||| || ||||||||||||||||||||||||||||||||||| ||||||||| ||| |||||||||| | ||||||||||| |
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| T |
25911269 |
acagtagcagttagcaccatgcttcagcaaatgaaagaaaggacgcatctgagaagcaaccagactatactttcaattatttatgtag |
25911356 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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