View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11379_low_34 (Length: 388)
Name: NF11379_low_34
Description: NF11379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11379_low_34 |
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Alignment Details
Target: chr7 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 19 - 381
Target Start/End: Complemental strand, 36887316 - 36886954
Alignment:
| Q |
19 |
attatgccagtaattaagcttaagtaagtcaattcaaacagactctaagatcataatgatattgataattgttatccgtgttctatgtcaaaatgcagaa |
118 |
Q |
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| T |
36887316 |
attataccagtaattaagcttaagtaagtcaattcagttagaccctaagatcagaatgatattgataattggtatccgtgttctatgtcaaaatgcagaa |
36887217 |
T |
|
| Q |
119 |
acattcaagggttagacctcactgggagtctatgcaggctttataatctccgaaatttgaaacagctgtgagtgtttttgaatttgcaaggcattagtat |
218 |
Q |
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| T |
36887216 |
acattcaagggttagacctcactgggagtctatgcaggctttataatctccgaaatttgaaacagctgtgagtgtttttgattttgcaaggcattagtat |
36887117 |
T |
|
| Q |
219 |
tagattcttatattaggatatgtgaatttcaagttatgctattaattgacctgtttccatgtttttggtttttgtaggtatgtcagttctaataacatag |
318 |
Q |
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| T |
36887116 |
tagattcttatatcaggatatgtgaatttcaagttatgctattaattaacttgtttccatatttttggtttttgtagggatgtcagttctaataacatag |
36887017 |
T |
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| Q |
319 |
tgggcgaaataccgtttggtttaccccccaatgtcacacatatgtaaggcaactgttcttctc |
381 |
Q |
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| T |
36887016 |
tgggcgaaatgccgtttggtttaccccccaatgtcacacatatgtaaggcaactgttcttctc |
36886954 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 66
Target Start/End: Complemental strand, 11297153 - 11297107
Alignment:
| Q |
20 |
ttatgccagtaattaagcttaagtaagtcaattcaaacagactctaa |
66 |
Q |
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| T |
11297153 |
ttatgccactagataagcttaaataagtcaattcaaacagactctaa |
11297107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 298 - 376
Target Start/End: Complemental strand, 22557218 - 22557140
Alignment:
| Q |
298 |
atgtcagttctaataacatagtgggcgaaataccgtttggtttaccccccaatgtcacacatatgtaaggcaactgttc |
376 |
Q |
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|||||||||| || | |||| |||| ||||| || | ||| ||||||||||||| |||||||||||||| | ||||||| |
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| T |
22557218 |
atgtcagttccaacagcataatgggtgaaattccatatggattaccccccaatgccacacatatgtaagcctactgttc |
22557140 |
T |
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