View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11379_low_35 (Length: 387)
Name: NF11379_low_35
Description: NF11379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11379_low_35 |
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| [»] chr1 (6 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 333; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 14 - 387
Target Start/End: Original strand, 47745332 - 47745705
Alignment:
| Q |
14 |
gaacaagtaaaacaaggtaacctaactgtaatcaccatgtagtaattaagtatgattaggtaatgacaattagtaattattaccttcttctggtggggag |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47745332 |
gaacaagtaaaacaaggtaacctaactgtaatcaccatgtagtaattaagtatgattaggtaatgacaattagtaattattaccttcttctggtggggag |
47745431 |
T |
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| Q |
114 |
gtttcatcttggtctattactgtcgtaggaccatagaaggaatatatttcatatctaatattacaacttcgtttgagaactctagcaccaatcttcttat |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |||| |
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| T |
47745432 |
gtttcatcttggtctattactgtcgtaggaccatagaaggaatatatttcatatctaatattacaacttagtttgagaactctaccaccaatcttgttat |
47745531 |
T |
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| Q |
214 |
tnnnnnnncttggaatttctgaaatagcacgctctaaacaatcattgcaatcttgtcctgacaagtcaggtgtacactgcacaagaccatatatggtttc |
313 |
Q |
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| T |
47745532 |
aaaaaaaacttggagtttctgaaatagcacgctctaaacaatcattgcaatcttgtcctgacaagtcaggtgtacactgcacaagaccatatatggtttc |
47745631 |
T |
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| Q |
314 |
aaaattcaaagttgcattagcggtagcaaacttacgacgagaatcacctgatgcagctatttcattgagtttcc |
387 |
Q |
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| T |
47745632 |
aaaattcaaagttgcattagcggtagcaaacttacgacgagaatcacctgatgcagctatttcattgagtttcc |
47745705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 65 - 387
Target Start/End: Original strand, 47717597 - 47717916
Alignment:
| Q |
65 |
atgattaggtaatgacaattagtaattattaccttcttctggtggggaggtttcatcttggtctattactgtcgtaggaccatagaaggaatatatttca |
164 |
Q |
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| T |
47717597 |
atgattaattaacgacaattagtaatta---ccttcttctgatggggaggtttcacctgggtctattacaggtgtaggatcatagaaggaatagatttca |
47717693 |
T |
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| Q |
165 |
tatctaatattacaacttcgtttgagaactctagcaccaatcttcttattnnnnnnncttggaatttctgaaatagcacgctctaaacaatcattgcaat |
264 |
Q |
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| ||||||||| |||||| ||||||||||| || | |||| ||| ||||| | |||||||||||||||||||||||||||||||||||||||| |
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| T |
47717694 |
tgtctaatattgcaacttggtttgagaactataccgccaaccttgttattaaaataaataggaatttctgaaatagcacgctctaaacaatcattgcaat |
47717793 |
T |
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| Q |
265 |
cttgtcctgacaagtcaggtgtacactgcacaagaccatatatggtttcaaaattcaaagttgcattagcggtagcaaacttacgacgagaatcacctga |
364 |
Q |
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| T |
47717794 |
cttgctgtgataaatcaggtgtacactgcacaagaccatatgtggtttcaaaattcaaagttgcattagcggtagcaaacttacgacgagaatcacttga |
47717893 |
T |
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| Q |
365 |
tgcagctatttcattgagtttcc |
387 |
Q |
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||| |||||||| |||||||||| |
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| T |
47717894 |
tgctgctatttctttgagtttcc |
47717916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 14 - 376
Target Start/End: Original strand, 47712743 - 47713111
Alignment:
| Q |
14 |
gaacaagtaaaacaaggtaacctaactgtaatcaccatgtagtaattaagtatgattaggt-aatgacaattagtaattattaccttcttctggtgggga |
112 |
Q |
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| T |
47712743 |
gaacaagtaaaacaaaataacctaaatttaatcaccttgtagcaat-aagtatgattaagttaatgacaatcagtaatta---ccttcttctgatgggga |
47712838 |
T |
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| Q |
113 |
ggtttcatcttggtctattactgtcgtaggaccatagaaggaatatatttcatatctaatattacaacttcgtttgagaactctagcaccaatcttctta |
212 |
Q |
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| T |
47712839 |
gtgttcatcttggtttattactgttgtaggatcagagaagcgatagacttcatatctaatattacaacttggtttgacaactctacaaccaatcttgtta |
47712938 |
T |
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| Q |
213 |
ttnnnnnnncttggaatttctgaaatagcacgctctaaacaatcattgcaatcttgtcctgacaagtcaggtgtacactgcacaagaccatatatggttt |
312 |
Q |
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| T |
47712939 |
taacagtaaattggaatttctgatatagcaaactctaaacaatcattgcaatcttgctctgacaaatcaggtgtacactgcacaagaccatatatggttt |
47713038 |
T |
|
| Q |
313 |
caaaattcaa---------agttgcattagcggtagcaaacttacgacgagaatcacctgatgcagctatttc |
376 |
Q |
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| T |
47713039 |
gaaaattcaaattcacatcagttgcattatccgcagcaaacttaagacgagaatcacttgatgcagctatttc |
47713111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 65 - 371
Target Start/End: Original strand, 47759709 - 47760021
Alignment:
| Q |
65 |
atgattaggtaatgacaattagtaattattaccttcttctggtggggaggtttcatcttggtctattactgtcgtaggaccatagaaggaatatatttca |
164 |
Q |
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||||||| ||||||||||||||||||| |||||||||| ||||||||||||| || |||||||| | | |||||| |||||||| | | ||||| |
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| T |
47759709 |
atgattaattaatgacaattagtaatta---ccttcttctgatggggaggtttcacctgggtctattgcaggtgtaggatcatagaagctagaggtttca |
47759805 |
T |
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| Q |
165 |
tatctaatattacaacttcgtttgagaactctagcaccaatcttcttattnnnnnnncttggaatttctgaaatagcacgctctaaacaatcattgcaat |
264 |
Q |
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||||| |||||||||||| |||||||||||||| |||||||||| ||||| |||||||| ||||| ||||||| |||||||||| |||||||| |
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| T |
47759806 |
tatctgatattacaacttggtttgagaactctaccaccaatcttgttattacaacaacttggaatatctgagatagcaccatctaaacaattattgcaat |
47759905 |
T |
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| Q |
265 |
cttgtcctgacaagtcaggtgtacactgcacaagaccatatatggtttcaaaattcaa---------agttgcattagcggtagcaaacttacgacgaga |
355 |
Q |
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|||| ||||||| |||||||| ||||| ||||||||||||||||||| ||||||||| |||||||||| | |||||||| ||||||||||| |
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| T |
47759906 |
cttgctctgacaaatcaggtgtgcactgaacaagaccatatatggtttgaaaattcaaatttacatcagttgcattatctgtagcaaatttacgacgaga |
47760005 |
T |
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| Q |
356 |
atcacctgatgcagct |
371 |
Q |
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| T |
47760006 |
atcacttgatgcagct |
47760021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 100 - 214
Target Start/End: Original strand, 47704828 - 47704942
Alignment:
| Q |
100 |
cttctggtggggaggtttcatcttggtctattactgtcgtaggaccatagaaggaatatatttcatatctaatattacaacttcgtttgagaactctagc |
199 |
Q |
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|||||| |||||||||||||||| |||||||||||||||||||||||||||||| || |||||||||||||||| |||||| |||||| |||||| | |
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| T |
47704828 |
cttctgatggggaggtttcatctgggtctattactgtcgtaggaccatagaagggattggtttcatatctaatattgcaacttggtttgataactcttcc |
47704927 |
T |
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| Q |
200 |
accaatcttcttatt |
214 |
Q |
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| T |
47704928 |
accaatcttgttatt |
47704942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 273 - 314
Target Start/End: Complemental strand, 47782277 - 47782236
Alignment:
| Q |
273 |
gacaagtcaggtgtacactgcacaagaccatatatggtttca |
314 |
Q |
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| T |
47782277 |
gacaagtcaggtgtacactgaacaagaccatatattgtttca |
47782236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 160 - 206
Target Start/End: Original strand, 28830930 - 28830976
Alignment:
| Q |
160 |
tttcatatctaatattacaacttcgtttgagaactctagcaccaatc |
206 |
Q |
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| T |
28830930 |
tttcatatctaatattacaacttggtttcataactctagcaccaatc |
28830976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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