View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11379_low_37 (Length: 378)
Name: NF11379_low_37
Description: NF11379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11379_low_37 |
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Alignment Details
Target: chr4 (Bit Score: 295; Significance: 1e-165; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 18 - 337
Target Start/End: Original strand, 33260216 - 33260535
Alignment:
| Q |
18 |
tttataactaaagttttaatattttatttttactacgatgaataaacaacacagaacaacttctattttttaaaaaagaaatttatataaagtaatcttt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33260216 |
tttataactaaagttttaatattttatttttactacgatgaataaacaacacagaacaacttctattttttaaaaaagaaatttatataaagtaatcttt |
33260315 |
T |
|
| Q |
118 |
aatatcaatctttttatagtccatattaaacacatgaaacctaattttaggtaaagtatcaattttaattaactcattgcctctctaccatatcgatata |
217 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33260316 |
aatatcaatttttttatagtccatattaaacacatgaaacctaattttaggtaaagtatcaattttaattaactcattgcctctctaccatatcgatata |
33260415 |
T |
|
| Q |
218 |
gtcccacaatctttcatacaatttcattttcaattgtcactttataaccttaannnnnnnaggataaagggtcatgcaaggctacaatgcgtattgaaat |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
33260416 |
gtcccacaatctttcatacaatttcattttcaattgtcactttataaccttaatttttttaggataaagggtcatgcaaggctacaatgcgtattgaaat |
33260515 |
T |
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| Q |
318 |
tagcattagcattagcatta |
337 |
Q |
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|||||||||||||||||||| |
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| T |
33260516 |
tagcattagcattagcatta |
33260535 |
T |
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