View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11379_low_38 (Length: 378)
Name: NF11379_low_38
Description: NF11379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11379_low_38 |
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| [»] chr7 (1 HSPs) |
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| [»] chr3 (2 HSPs) |
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| [»] chr8 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 18 - 254
Target Start/End: Complemental strand, 11470478 - 11470246
Alignment:
| Q |
18 |
aagaaactcatctgagttgcatcaaaattaatgatccttcaatatgcttatgtcctagataatttgagagggaacatgaatactatcaggatgagccatg |
117 |
Q |
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| T |
11470478 |
aagaaactcatctgagttgcatcaaaat----gatccttcaatatgcttatgtcctagataatttgagagggagcatgaatactatcaggatgagccatg |
11470383 |
T |
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| Q |
118 |
acaacttcaaaattatattcaagtacttatttcagtctctcccatgaatgaagtaccttctgagtgccaggattggaagaagtaacactagaagaatcaa |
217 |
Q |
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| T |
11470382 |
acaacttcaaaattatattcaagtacttatttcagtctctcccatgaatgaagtaccttctgagtgccaggattggaagaagtaacactagaagaatcaa |
11470283 |
T |
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| Q |
218 |
cagaaatgggagaattaacgctacccattgttagaac |
254 |
Q |
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| T |
11470282 |
cagaaatgggagaattaacgctgcccattgttagaac |
11470246 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 262 - 375
Target Start/End: Complemental strand, 11470200 - 11470087
Alignment:
| Q |
262 |
tttattccttaaatttactagcttcaattgaatctcaaaagtcaaaacttaggggcatatgttgacgacgagacagtgtatttcttaacatattttctta |
361 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |
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| T |
11470200 |
tttattccttaaatttactagcttcaatagaatctcaaaagtcaaaacttaggggcatatgttgacaacgagacaatgtatttcttaacatattttctta |
11470101 |
T |
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| Q |
362 |
attacacatcatta |
375 |
Q |
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| T |
11470100 |
attacacatcatta |
11470087 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 338 - 378
Target Start/End: Complemental strand, 48852743 - 48852703
Alignment:
| Q |
338 |
tgtatttcttaacatattttcttaattacacatcattatct |
378 |
Q |
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| T |
48852743 |
tgtatttgttaacattttttcttaattatacatcattatct |
48852703 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 332 - 378
Target Start/End: Complemental strand, 44601106 - 44601060
Alignment:
| Q |
332 |
agacagtgtatttcttaacatattttcttaattacacatcattatct |
378 |
Q |
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| T |
44601106 |
agacagtgtatttgctaacacattttcttaattacacatcattatct |
44601060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 332 - 378
Target Start/End: Complemental strand, 2672009 - 2671963
Alignment:
| Q |
332 |
agacagtgtatttcttaacatattttcttaattacacatcattatct |
378 |
Q |
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| T |
2672009 |
agacagtgtatttgttaacatctttccttaattacacatcattatct |
2671963 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 332 - 378
Target Start/End: Original strand, 1713980 - 1714026
Alignment:
| Q |
332 |
agacagtgtatttcttaacatattttcttaattacacatcattatct |
378 |
Q |
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| T |
1713980 |
agacagtgtatttattaacatattttcttaattatacacaattatct |
1714026 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 332 - 378
Target Start/End: Complemental strand, 25124476 - 25124430
Alignment:
| Q |
332 |
agacagtgtatttcttaacatattttcttaattacacatcattatct |
378 |
Q |
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| T |
25124476 |
agacagtgtatttgttaataccttttcttaattacacatcattatct |
25124430 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 336 - 378
Target Start/End: Complemental strand, 31125407 - 31125365
Alignment:
| Q |
336 |
agtgtatttcttaacatattttcttaattacacatcattatct |
378 |
Q |
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| T |
31125407 |
agtgtatttattaacacattttcttaattacatatcattatct |
31125365 |
T |
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