View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11379_low_39 (Length: 373)

Name: NF11379_low_39
Description: NF11379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11379_low_39
NF11379_low_39
[»] chr7 (6 HSPs)
chr7 (1-364)||(65263-65626)
chr7 (1-182)||(9272653-9272835)
chr7 (159-236)||(9272884-9272961)
chr7 (159-227)||(9272860-9272929)
chr7 (232-281)||(46002220-46002269)
chr7 (312-364)||(9272973-9273025)
[»] chr6 (10 HSPs)
chr6 (159-364)||(22625480-22625685)
chr6 (1-227)||(29955179-29955406)
chr6 (1-189)||(22625227-22625415)
chr6 (1-227)||(12491987-12492214)
chr6 (160-364)||(12492217-12492419)
chr6 (159-308)||(29955004-29955153)
chr6 (159-225)||(12492169-12492235)
chr6 (159-225)||(29955158-29955224)
chr6 (159-225)||(22625409-22625475)
chr6 (246-291)||(21857902-21857947)
[»] chr5 (1 HSPs)
chr5 (17-348)||(31094742-31095079)
[»] chr2 (12 HSPs)
chr2 (159-365)||(19713883-19714089)
chr2 (159-365)||(19704289-19704495)
chr2 (1-227)||(19714115-19714342)
chr2 (36-180)||(19704569-19704713)
chr2 (159-225)||(19704500-19704566)
chr2 (159-225)||(19714094-19714160)
chr2 (3-38)||(19709474-19709509)
chr2 (232-280)||(22404436-22404484)
chr2 (238-281)||(16329548-16329591)
chr2 (232-281)||(29045952-29046000)
chr2 (232-280)||(27976615-27976663)
chr2 (232-280)||(28063143-28063191)
[»] chr3 (7 HSPs)
chr3 (159-362)||(10051088-10051290)
chr3 (3-202)||(10050908-10051107)
chr3 (1-189)||(1208541-1208730)
chr3 (159-348)||(3415496-3415684)
chr3 (127-227)||(3415639-3415741)
chr3 (232-281)||(40888091-40888140)
chr3 (232-281)||(11649941-11649990)
[»] scaffold0631 (4 HSPs)
scaffold0631 (1-227)||(4491-4718)
scaffold0631 (207-364)||(4816-4979)
scaffold0631 (159-225)||(4744-4810)
scaffold0631 (159-225)||(4673-4739)
[»] scaffold0057 (2 HSPs)
scaffold0057 (1-227)||(76116-76343)
scaffold0057 (159-362)||(75958-76161)
[»] chr8 (8 HSPs)
chr8 (159-362)||(24499355-24499557)
chr8 (232-281)||(9884369-9884418)
chr8 (127-225)||(24499562-24499662)
chr8 (232-280)||(42076991-42077039)
chr8 (235-281)||(9817693-9817739)
chr8 (232-278)||(24423779-24423825)
chr8 (8-50)||(24499805-24499847)
chr8 (232-277)||(21231342-21231387)
[»] scaffold1028 (3 HSPs)
scaffold1028 (160-364)||(1301-1511)
scaffold1028 (1-202)||(1047-1248)
scaffold1028 (159-225)||(1229-1295)
[»] chr1 (7 HSPs)
chr1 (1-235)||(20601060-20601296)
chr1 (159-364)||(20600885-20601089)
chr1 (232-354)||(2269034-2269156)
chr1 (232-285)||(11917677-11917730)
chr1 (127-277)||(42833824-42833976)
chr1 (232-281)||(13379545-13379594)
chr1 (17-50)||(42833655-42833688)
[»] scaffold0582 (2 HSPs)
scaffold0582 (1-202)||(9499-9691)
scaffold0582 (324-364)||(9453-9493)
[»] chr4 (3 HSPs)
chr4 (1-134)||(15210952-15211085)
chr4 (232-281)||(31518547-31518596)
chr4 (232-280)||(41942554-41942602)
[»] scaffold0807 (1 HSPs)
scaffold0807 (1-109)||(1-109)
[»] scaffold0028 (1 HSPs)
scaffold0028 (232-281)||(147937-147986)
[»] scaffold0224 (2 HSPs)
scaffold0224 (127-277)||(20904-21056)
scaffold0224 (17-50)||(20735-20768)
[»] scaffold0150 (1 HSPs)
scaffold0150 (235-281)||(35305-35351)
[»] scaffold0022 (1 HSPs)
scaffold0022 (235-280)||(2646-2691)


Alignment Details
Target: chr7 (Bit Score: 336; Significance: 0; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 1 - 364
Target Start/End: Original strand, 65263 - 65626
Alignment:
Q  1 cattatgatttgactctcttgtgctttagagaaaatgctttgatgaatgtgatgaatattttgaaagaaaatttgaatatcttagttgatgctgtgaaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| | ||||||    
T  65263 cattatgatttgactctcttgtgctttagagaaaatgctttgatgaatgtgatgaatattttgaaaggaagtttgaatatcttagttgatgttttgaaaa 65362  T
Q  101 tggtgatgatttcaaagagtgcccatcatgcatggcatgacatgtagttgtgtcatagggtgccgtaagggcgatttactcttgtgccgagagggccatt 200  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  65363 tggtgatgatttcaaagagtgcgcatcatgcatggcatgacatgtagttgtgtcatagggtgccgtaagggcgatttactcttgtgccgagagggccatt 65462  T
Q  201 tattatgtgccgaaagggcgatttattcttgtgccaattggggcgatatccggatcatggtcaagttgcatctcatgcatcatttgcataaaaatcgtat 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  65463 tattatgtgccgaaagggcgatttattcttgtgccaattggggcgatatccggatcatggtcaagttgcatctcatgcatcatttgcataaaaatcgtat 65562  T
Q  301 tttgatttatgttatctgtattaagcttttgactcttatgtggtgagtgttttactgttcttct 364  Q
    ||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||    
T  65563 tttgatttatgttatttgtattgagcttttgactcttatgtggtgagtgttttactgttcttct 65626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 1 - 182
Target Start/End: Original strand, 9272653 - 9272835
Alignment:
Q  1 cattatgatttgactctcttgtgctttagagaaaatgctttgatgaatgtgatgaatattttgaaagaaaatttgaatatctt-agttgatgctgtgaaa 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |||||||| |||||||    
T  9272653 cattatgatttgactctcttgtgctttagagaaaatgctttgatgaatgtgatgaatattttgaaagaaagtttgaatattttaagttgatgttgtgaaa 9272752  T
Q  100 atggtgatgatttcaaagagtgcccatcatgcatggcatgacatgtagttgtgtcatagggtgcc-gtaagggcgatttactct 182  Q
    ||||||||||||||||||||||  |||||| |||||| || ||| ||||||||||||||| ||||  | |||||||||||||||    
T  9272753 atggtgatgatttcaaagagtgtgcatcatccatggc-tggcatctagttgtgtcataggttgccaatgagggcgatttactct 9272835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 159 - 236
Target Start/End: Original strand, 9272884 - 9272961
Alignment:
Q  159 ggtgccgtaagggcgatttactcttgtgccgagagggccatttattatgtgccgaaagggcgatttattcttgtgcca 236  Q
    |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||    
T  9272884 ggtgccgtaagggcgatttactcttgtgccgaaagggcgatttattatgtgccgaacgggcgatttattcttgtgcca 9272961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 159 - 227
Target Start/End: Original strand, 9272860 - 9272929
Alignment:
Q  159 ggtgccgtaagggcgatttactcttgtgccgagagggccattta-ttatgtgccgaaagggcgatttatt 227  Q
    |||| ||||||||||||||||||| ||||||  ||||| ||||| |  ||||||||||||||||||||||    
T  9272860 ggtgacgtaagggcgatttactctggtgccgtaagggcgatttactcttgtgccgaaagggcgatttatt 9272929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 232 - 281
Target Start/End: Complemental strand, 46002269 - 46002220
Alignment:
Q  232 tgccaattggggcgatatccggatcatggtcaagttgcatctcatgcatc 281  Q
    |||||||||||||||||||  |||||||||| |||||||| |||||||||    
T  46002269 tgccaattggggcgatatctagatcatggtctagttgcatttcatgcatc 46002220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 312 - 364
Target Start/End: Original strand, 9272973 - 9273025
Alignment:
Q  312 ttatctgtattaagcttttgactcttatgtggtgagtgttttactgttcttct 364  Q
    |||| |||||| ||| |||||||||||||||||||||| ||||| ||||||||    
T  9272973 ttatttgtattgagcctttgactcttatgtggtgagtgatttacagttcttct 9273025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 190; Significance: 1e-103; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 159 - 364
Target Start/End: Original strand, 22625480 - 22625685
Alignment:
Q  159 ggtgccgtaagggcgatttactcttgtgccgagagggccatttattatgtgccgaaagggcgatttattcttgtgccaattggggcgatatccggatcat 258  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22625480 ggtgccgtaagggcgatttactcttgtgccgagaaggccatttattatgtgccgaaagggcgatttattcttgtgccaattggggcgatatccggatcat 22625579  T
Q  259 ggtcaagttgcatctcatgcatcatttgcataaaaatcgtattttgatttatgttatctgtattaagcttttgactcttatgtggtgagtgttttactgt 358  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| |||||||||||||||||||||||||||||||||||    
T  22625580 ggtcaagttgcatctcatgcatcatttgcataaaaatcgtattttgatttctgttatttgtattgagcttttgactcttatgtggtgagtgttttactgt 22625679  T
Q  359 tcttct 364  Q
    ||||||    
T  22625680 tcttct 22625685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 29955406 - 29955179
Alignment:
Q  1 cattatgatttgactctcttgtgctttagagaaaatgctttgatgaatgtgatgaatattttgaaagaaaatttgaatatcttagttgatgctgtgaaaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||    
T  29955406 cattatgatttgactctcttgtgctttagagaaaatgctttgatgaatgtgatgaatattttgaaagaaagtttgaatatcttagttgatgttgtgaaaa 29955307  T
Q  101 tggtgatgatttcaaagagtgcccatcatgcatggcatgacatgtagttgtgtcatagggtgccgtaagggcgatttactcttgtgccgagagggccatt 200  Q
    |||||||||||||||||||||   ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||  ||||| |||    
T  29955306 tggtgatgatttcaaagagtgtgaatcatgcatggcatggcatgtagttgtgtcatagggtgccgtaagggcgatttactctggtgccgtaagggcgatt 29955207  T
Q  201 ta-ttatgtgccgaaagggcgatttatt 227  Q
    || |  |||||||| ||||| |||||||    
T  29955206 tactcttgtgccgagagggccatttatt 29955179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 22625227 - 22625415
Alignment:
Q  1 cattatgatttgactctcttgtgctttagagaaaatgctttgatgaatgtgatgaatattttgaaagaaaatttgaatatcttagttgatgctgtgaaaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |||||||||||||||| ||||||||    
T  22625227 cattatgatttgactctcttgtgctttagagaaaatgctttgatgaatatgatgaatattttgaaagaaagtttaaatatcttagttgatgttgtgaaaa 22625326  T
Q  101 tggtgatgatttcaaagagtgcccatcatgcatggcatgacatgtagttgtgtcatagggtgccgtaagggcgatttactcttgtgccg 189  Q
    ||||||| |||||||||||||  |||||||||||||||| |||||||||||||||||||||| ||||||||||||||| ||| ||||||    
T  22625327 tggtgataatttcaaagagtgtgcatcatgcatggcatggcatgtagttgtgtcatagggtgtcgtaagggcgatttagtctggtgccg 22625415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 12491987 - 12492214
Alignment:
Q  1 cattatgatttgactctcttgtgctttagagaaaatgctttgatgaatgtgatgaatattttgaaagaaaatttgaatatcttagttgatgctgtgaaaa 100  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||    
T  12491987 cattatgatttgactctcttgtgctttagagaaaatgttttgatgaatgtgatgaatattttgaaagaaagtttgaatatcttagttgatgttgtgaaaa 12492086  T
Q  101 tggtgatgatttcaaagagtgcccatcatgcatggcatgacatgtagttgtgtcatagggtgccgtaagggcgatttactcttgtgccgagagggccatt 200  Q
    |||||||||||||||||||||  |||||||||||||||| ||||||||||||||||||||||  ||||  |||||||||| | ||||||  ||||| |||    
T  12492087 tggtgatgatttcaaagagtgtgcatcatgcatggcatggcatgtagttgtgtcatagggtgttgtaatagcgatttactttggtgccgtaagggcgatt 12492186  T
Q  201 ta-ttatgtgccgaaagggcgatttatt 227  Q
    || |  |||||||| ||||| |||||||    
T  12492187 tactcttgtgccgagagggccatttatt 12492214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 160 - 364
Target Start/End: Original strand, 12492217 - 12492419
Alignment:
Q  160 gtgccgtaagggcgatttactcttgtgccgagagggccatttattatgtgccgaaagggcgatttattcttgtgccaattggggcgatatccggatcatg 259  Q
    |||||||||||||||||||||  |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| |||||||    
T  12492217 gtgccgtaagggcgatttact--tgtgccgagagggccatttattatgtgccgaacgggcgatttattcttgtgctaattggggcgatatccagatcatg 12492314  T
Q  260 gtcaagttgcatctcatgcatcatttgcataaaaatcgtattttgatttatgttatctgtattaagcttttgactcttatgtggtgagtg-ttttactgt 358  Q
    ||| ||||||||||||||||||||||||||||| |||||||||  |||||| |||| |||||| |||||||||||||||||||||||||| |||||||||    
T  12492315 gtctagttgcatctcatgcatcatttgcataaagatcgtatttatatttat-ttatttgtattgagcttttgactcttatgtggtgagtgtttttactgt 12492413  T
Q  359 tcttct 364  Q
    ||||||    
T  12492414 tcttct 12492419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 159 - 308
Target Start/End: Complemental strand, 29955153 - 29955004
Alignment:
Q  159 ggtgccgtaagggcgatttactcttgtgccgagagggccatttattatgtgccgaaagggcgatttattcttgtgccaattggggcgatatccggatcat 258  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29955153 ggtgccgtaagggcgatttactcttgtgccgagagggccatttattatgtgccgaaagggcgatttattcttgtgccaattggggcgatatccggatcat 29955054  T
Q  259 ggtcaagttgcatctcatgcatcatttgcataaaaatcgtattttgattt 308  Q
    |||||||||||||||||||||||||||||||||| |||||||||| ||||    
T  29955053 ggtcaagttgcatctcatgcatcatttgcataaagatcgtattttaattt 29955004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 159 - 225
Target Start/End: Original strand, 12492169 - 12492235
Alignment:
Q  159 ggtgccgtaagggcgatttactcttgtgccgagagggccatttattatgtgccgaaagggcgattta 225  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  12492169 ggtgccgtaagggcgatttactcttgtgccgagagggccatttattatgtgccgtaagggcgattta 12492235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 159 - 225
Target Start/End: Complemental strand, 29955224 - 29955158
Alignment:
Q  159 ggtgccgtaagggcgatttactcttgtgccgagagggccatttattatgtgccgaaagggcgattta 225  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  29955224 ggtgccgtaagggcgatttactcttgtgccgagagggccatttattatgtgccgtaagggcgattta 29955158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 159 - 225
Target Start/End: Original strand, 22625409 - 22625475
Alignment:
Q  159 ggtgccgtaagggcgatttactcttgtgccgagagggccatttattatgtgccgaaagggcgattta 225  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  22625409 ggtgccgtaagagcgatttactcttgtgccgagagggccatttattatgtgccgtaagggcgattta 22625475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 291
Target Start/End: Original strand, 21857902 - 21857947
Alignment:
Q  246 atatccggatcatggtcaagttgcatctcatgcatcatttgcataa 291  Q
    ||||||||||||||||| |||||||| | ||||||||||| |||||    
T  21857902 atatccggatcatggtctagttgcatattatgcatcatttacataa 21857947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 176; Significance: 1e-94; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 17 - 348
Target Start/End: Original strand, 31094742 - 31095079
Alignment:
Q  17 tcttgtgctttagagaaaatgctttgatgaatgtgatgaatattttgaaagaaaatttgaatatcttagttgatgctgtgaaaatggtgatgatttcaaa 116  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || ||||||| ||||||||||||||||||||||||    
T  31094742 tcttgttctttagagaaaatgctttgatgaatgtgatgaatattttgaaagaaagtttgaatattttcgttgatgttgtgaaaatggtgatgatttcaaa 31094841  T
Q  117 gag--tgcccatcatgcatggcatgacatgtagttgtgtcatagggtgccgtaagggcgatttactcttgtgccgagagggccattta-----ttatgtg 209  Q
    |||  |||  | ||||||||||||| ||||||||||||||||||||||||| |||||||||||||| | ||||||  ||||| |||||     ||  |||    
T  31094842 gagaatgcataacatgcatggcatggcatgtagttgtgtcatagggtgccgaaagggcgatttactttggtgccgtaagggcgatttatattttttggtg 31094941  T
Q  210 ccgaaagggcgatttattcttgtgccaattggggcgatatccggatcatggtcaagttgcatctcatgcatcatttgcataaaaatcgtattttgattta 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||  |||||||  |  |||||  |||||    
T  31094942 ccgaaagggcgatttattcttgtgccaattggggcgatatccggatcatggtctaggtgcatctcatgcatcatccgcataaagtttatatttctattta 31095041  T
Q  310 tgttatctgtattaagcttttgactcttatgtggtgagt 348  Q
    | |||| ||||||  |||||||||| |||||||||||||    
T  31095042 t-ttatttgtatttggcttttgacttttatgtggtgagt 31095079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 171; Significance: 9e-92; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 159 - 365
Target Start/End: Complemental strand, 19714089 - 19713883
Alignment:
Q  159 ggtgccgtaagggcgatttactcttgtgccgagagggccatttattatgtgccgaaagggcgatttattcttgtgccaattggggcgatatccggatcat 258  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  19714089 ggtgccgtaagggcgatttactcttgtgccgagagggccatttattatgtgccgaaagggcgatttattcttgtgctaattggggcgatatccggatcat 19713990  T
Q  259 ggtcaagttgcatctcatgcatcatttgcataaaaatcgtattttgatttatgttatctgtattaagcttttgactcttatgtggtgagtgttttactgt 358  Q
    |||||||||||||||||||||||||||||||||| |||||||||| |||| |||||| |||||| ||| ||||||||||||||||||| | |||||||||    
T  19713989 ggtcaagttgcatctcatgcatcatttgcataaatatcgtattttaatttctgttatttgtattgagcctttgactcttatgtggtgactattttactgt 19713890  T
Q  359 tcttctc 365  Q
    |||||||    
T  19713889 tcttctc 19713883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 159 - 365
Target Start/End: Complemental strand, 19704495 - 19704289
Alignment:
Q  159 ggtgccgtaagggcgatttactcttgtgccgagagggccatttattatgtgccgaaagggcgatttattcttgtgccaattggggcgatatccggatcat 258  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||    
T  19704495 ggtgtcgtaagggcgatttactcttgtgccgagagggccatttattatgtgccgaaagggcgatttattcttgtgtcaattggggtgatatccggatcat 19704396  T
Q  259 ggtcaagttgcatctcatgcatcatttgcataaaaatcgtattttgatttatgttatctgtattaagcttttgactcttatgtggtgagtgttttactgt 358  Q
    |||||||||||||||||||||||||||||||||| |||||||||| |||| |||||| |||||  ||| ||||||||||||||||||| |||||||||||    
T  19704395 ggtcaagttgcatctcatgcatcatttgcataaagatcgtattttaatttctgttatttgtatcgagcctttgactcttatgtggtgactgttttactgt 19704296  T
Q  359 tcttctc 365  Q
    |||||||    
T  19704295 tcttctc 19704289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 19714342 - 19714115
Alignment:
Q  1 cattatgatttgactctcttgtgctttagagaaaatgctttgatgaatgtgatgaatattttgaaagaaaatttgaatatcttagttgatgctgtgaaaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||    
T  19714342 cattatgatttgactctcttgtgctttagagaaaatgctttgatgaatgtgatgaatattttgaaagaaagtttgaatatctcagttgatgttgtgaaaa 19714243  T
Q  101 tggtgatgatttcaaagagtgcccatcatgcatggcatgacatgtagttgtgtcatagggtgccgtaagggcgatttactcttgtgccgagagggccatt 200  Q
    |||||||||||||||||||||   ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||  ||||| |||    
T  19714242 tggtgatgatttcaaagagtgtgaatcatgcatggcatggcatgtagttgtgtcatagggtgccgtaagggcgatttactctggtgccgtaagggcgatt 19714143  T
Q  201 ta-ttatgtgccgaaagggcgatttatt 227  Q
    || |  |||||||| ||||| |||||||    
T  19714142 tactcttgtgccgagagggccatttatt 19714115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 36 - 180
Target Start/End: Complemental strand, 19704713 - 19704569
Alignment:
Q  36 tgctttgatgaatgtgatgaatattttgaaagaaaatttgaatatcttagttgatgctgtgaaaatggtgatgatttcaaagagtgcccatcatgcatgg 135  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||  ||||||||||||    
T  19704713 tgctttgatgaatgtgatgaatattttgaaagaaagtttgaatatctcagttgatgttgtgaaaatggtgatgatttcaaagagtgtgcatcatgcatgg 19704614  T
Q  136 catgacatgtagttgtgtcatagggtgccgtaagggcgatttact 180  Q
    |||| ||||||||||||||||||||||  ||||  ||||||||||    
T  19704613 catggcatgtagttgtgtcatagggtgttgtaattgcgatttact 19704569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 159 - 225
Target Start/End: Complemental strand, 19704566 - 19704500
Alignment:
Q  159 ggtgccgtaagggcgatttactcttgtgccgagagggccatttattatgtgccgaaagggcgattta 225  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  19704566 ggtgccttaagggcgatttactcttgtgccgagagggccatttattatgtgccgtaagggcgattta 19704500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 159 - 225
Target Start/End: Complemental strand, 19714160 - 19714094
Alignment:
Q  159 ggtgccgtaagggcgatttactcttgtgccgagagggccatttattatgtgccgaaagggcgattta 225  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||    
T  19714160 ggtgccgtaagggcgatttactcttgtgccgagagggccatttattatgtgctgtaagggcgattta 19714094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 38
Target Start/End: Complemental strand, 19709509 - 19709474
Alignment:
Q  3 ttatgatttgactctcttgtgctttagagaaaatgc 38  Q
    ||||||||||||||||||||||||||||||||||||    
T  19709509 ttatgatttgactctcttgtgctttagagaaaatgc 19709474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 232 - 280
Target Start/End: Original strand, 22404436 - 22404484
Alignment:
Q  232 tgccaattggggcgatatccggatcatggtcaagttgcatctcatgcat 280  Q
    |||||||||||||||||||||||||||| || | |||||| ||||||||    
T  22404436 tgccaattggggcgatatccggatcatgctctatttgcatttcatgcat 22404484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 238 - 281
Target Start/End: Original strand, 16329548 - 16329591
Alignment:
Q  238 ttggggcgatatccggatcatggtcaagttgcatctcatgcatc 281  Q
    ||||||||||||||||||||||||| | |||||| |||||||||    
T  16329548 ttggggcgatatccggatcatggtctatttgcatttcatgcatc 16329591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 281
Target Start/End: Complemental strand, 29046000 - 29045952
Alignment:
Q  232 tgccaattggggcgatatccggatcatggtcaagttgcatctcatgcatc 281  Q
    |||||||||||||||||||||||||||| || | |||||| |||||||||    
T  29046000 tgccaattggggcgatatccggatcatgatctatttgcat-tcatgcatc 29045952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 280
Target Start/End: Complemental strand, 27976663 - 27976615
Alignment:
Q  232 tgccaattggggcgatatccggatcatggtcaagttgcatctcatgcat 280  Q
    ||||||||||||||||||| |||||||| || | |||||| ||||||||    
T  27976663 tgccaattggggcgatatctggatcatgatctatttgcatttcatgcat 27976615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 280
Target Start/End: Complemental strand, 28063191 - 28063143
Alignment:
Q  232 tgccaattggggcgatatccggatcatggtcaagttgcatctcatgcat 280  Q
    ||||||||||||||||||| |||||||| || | |||||| ||||||||    
T  28063191 tgccaattggggcgatatctggatcatgatctatttgcatttcatgcat 28063143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 168; Significance: 6e-90; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 159 - 362
Target Start/End: Original strand, 10051088 - 10051290
Alignment:
Q  159 ggtgccgtaagggcgatttactcttgtgccgagagggccatttattatgtgccgaaagggcgatttattcttgtgccaattggggcgatatccggatcat 258  Q
    |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  10051088 ggtgccgtaagggcgatttactcttgtgccgagaggac-atttattatgtgccgaaagggcaatttattcttgtgccaattggggcgatatccggatcat 10051186  T
Q  259 ggtcaagttgcatctcatgcatcatttgcataaaaatcgtattttgatttatgttatctgtattaagcttttgactcttatgtggtgagtgttttactgt 358  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| |||||||||||||||| |||||||||| |||||||    
T  10051187 ggtcaagttgcatctcatgcatcatttgcataaaaatcgtattttgatttctgttatttgtattgagcttttgactcttatctggtgagtgtcttactgt 10051286  T
Q  359 tctt 362  Q
    ||||    
T  10051287 tctt 10051290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 3 - 202
Target Start/End: Original strand, 10050908 - 10051107
Alignment:
Q  3 ttatgatttgactctcttgtgctttagagaaaatgctttgatgaatgtgatgaatattttgaaagaaaatttgaatatcttagttgatgctgtgaaaatg 102  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |||||||||||||||||||| ||||||||||    
T  10050908 ttatgatttgactctcttgtgctttagagaaaatgctttgataaatgtgatgaatattttgaaagagagtttgaatatcttagttgatgttgtgaaaatg 10051007  T
Q  103 gtgatgatttcaaagagtgcccatcatgcatggcatgacatgtagttgtgtcatagggtgccgtaagggcgatttactcttgtgccgagagggccattta 202  Q
    |||||||||||||||||||  ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||  ||||| |||||    
T  10051008 gtgatgatttcaaagagtgtgcatcatgcatggcatgacatgtaattgtgtcatagggtgccgtaagggcgatttactctggtgccgtaagggcgattta 10051107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 1208541 - 1208730
Alignment:
Q  1 cattatgatttgactctcttgtgctttagagaaaatgctttgatgaatgtgatgaatattttgaaagaaaatttgaatatcttagttgatgctgtgaaaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |||||||||| ||||||||    
T  1208541 cattatgatttgactctcttgtgctttagagaaaatgctttgatgaatgtgatgaacattttgaaagaaagtttgaatattttagttgatgttgtgaaaa 1208640  T
Q  101 tggtgatgatttcaaagagtgcccatcatgcatggcatgacatgtagttgtgtcatagggtgcc-gtaagggcgatttactcttgtgccg 189  Q
    ||||||||||||||||||||   |||||||||||||||||||||||||||||||| ||| ||||  | ||||| ||||||||| ||||||    
T  1208641 tggtgatgatttcaaagagtttgcatcatgcatggcatgacatgtagttgtgtcaaaggttgccaatgagggcaatttactctggtgccg 1208730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 159 - 348
Target Start/End: Complemental strand, 3415684 - 3415496
Alignment:
Q  159 ggtgccgtaagggcgatttactcttgtgccgagagggccatttattatgtgccgaaagggcgatttattcttgtgccaattggggcgatatccggatcat 258  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| | ||||||| ||||||||||||||||    
T  3415684 ggtgccgtaagggcgatttactcttgtgccgagagggcgatttattatgtgccgaacgggcgatttattcttgcgtcaattggagcgatatccggatcat 3415585  T
Q  259 ggtcaagttgcatctcatgcatcatttgcataaaaatcgtattttgatttatgttatctgtattaagcttttgactcttatgtggtgagt 348  Q
     ||| |||||||| ||||||||||||  ||||||  |  |||||  |||||| |||| | ||||  |||||||||| |||||||||||||    
T  3415584 agtctagttgcatttcatgcatcattcacataaagtttatatttctatttat-ttatttatatttggcttttgacttttatgtggtgagt 3415496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 127 - 227
Target Start/End: Complemental strand, 3415741 - 3415639
Alignment:
Q  127 catgcatggcatgacatgtagttgtgtcatagggtgcc-gtaagggcgatttactcttgtgccgagagggccattta-ttatgtgccgaaagggcgattt 224  Q
    ||||||| ||||| |||||| |||||||||||| ||||  | ||||||||||||||| ||||||  ||||| ||||| |  |||||||| ||||||||||    
T  3415741 catgcatagcatggcatgtaattgtgtcataggttgccaatgagggcgatttactctggtgccgtaagggcgatttactcttgtgccgagagggcgattt 3415642  T
Q  225 att 227  Q
    |||    
T  3415641 att 3415639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 232 - 281
Target Start/End: Complemental strand, 40888140 - 40888091
Alignment:
Q  232 tgccaattggggcgatatccggatcatggtcaagttgcatctcatgcatc 281  Q
    |||||||||||||||||||||||||||||||   |||||| |||||||||    
T  40888140 tgccaattggggcgatatccggatcatggtctgtttgcatttcatgcatc 40888091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 281
Target Start/End: Complemental strand, 11649990 - 11649941
Alignment:
Q  232 tgccaattggggcgatatccggatcatggtcaagttgcatctcatgcatc 281  Q
    |||||||||||| |||||| ||||||||||| |||| ||| |||||||||    
T  11649990 tgccaattggggtgatatctggatcatggtctagttacatttcatgcatc 11649941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0631 (Bit Score: 164; Significance: 1e-87; HSPs: 4)
Name: scaffold0631
Description:

Target: scaffold0631; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 4491 - 4718
Alignment:
Q  1 cattatgatttgactctcttgtgctttagagaaaatgctttgatgaatgtgatgaatattttgaaagaaaatttgaatatcttagttgatgctgtgaaaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||    
T  4491 cattatgatttgactctcttgtgctttagagaaaatgctttgatgaatgtgatgaatattttgaaagaaagtttgaatatcttagttgatgttgtgaaaa 4590  T
Q  101 tggtgatgatttcaaagagtgcccatcatgcatggcatgacatgtagttgtgtcatagggtgccgtaagggcgatttactcttgtgccgagagggccatt 200  Q
    |||||||||||||||||||||   ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||  ||||| |||    
T  4591 tggtgatgatttcaaagagtgtggatcatgcatggcatggcatgtagttgtgtcatagggtgccgtaagggcgatttactctggtgccgtaagggcgatt 4690  T
Q  201 ta-ttatgtgccgaaagggcgatttatt 227  Q
    || |  |||||||| ||||| |||||||    
T  4691 tactcttgtgccgagagggccatttatt 4718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0631; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 207 - 364
Target Start/End: Original strand, 4816 - 4979
Alignment:
Q  207 gtgccgaaagggcgatttattcttgtgccaattggggcgatatccggatcatggtcaagttgcatctcatgca-------tcatttgcataaaaatcgta 299  Q
    |||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||       |||||||||||| |||||||    
T  4816 gtgccgtaagggcgatttattcttgtgccaattgaggcgatatccggatcatggtcaagttgcatctcatgcatcattcctcatttgcataagaatcgta 4915  T
Q  300 ttttgatttatgttatctgtattaagcttttgactcttatgtggtgagtgttttactgttcttct 364  Q
    |||  |||||| |||| |||||| |||||||||||||||||||||||||||||||||||||||||    
T  4916 tttatatttat-ttatttgtattgagcttttgactcttatgtggtgagtgttttactgttcttct 4979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0631; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 159 - 225
Target Start/End: Original strand, 4744 - 4810
Alignment:
Q  159 ggtgccgtaagggcgatttactcttgtgccgagagggccatttattatgtgccgaaagggcgattta 225  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  4744 ggtgccgtaagggcgatttactcttgtgccgagagggccatttattatgtgccgtaagggcgattta 4810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0631; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 159 - 225
Target Start/End: Original strand, 4673 - 4739
Alignment:
Q  159 ggtgccgtaagggcgatttactcttgtgccgagagggccatttattatgtgccgaaagggcgattta 225  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||    
T  4673 ggtgccgtaagggcgatttactcttgtgccgagagggccatttattatgtgctgtaagggcgattta 4739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 156; Significance: 8e-83; HSPs: 2)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 76343 - 76116
Alignment:
Q  1 cattatgatttgactctcttgtgctttagagaaaatgctttgatgaatgtgatgaatattttgaaagaaaatttgaatatcttagttgatgctgtgaaaa 100  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| ||||||||    
T  76343 cattatgatatgactctcttgtgctttagagaaaatgctttgatgaatgtgatgaatattttgaaagaaagtttgaatattttagttgatgttgtgaaaa 76244  T
Q  101 tggtgatgatttcaaagagtgcccatcatgcatggcatgacatgtagttgtgtcatagggtgccgtaagggcgatttactcttgtgccgagagggccatt 200  Q
    |||||||||||||||||||||  |||||||||||||||| ||||||||||||||||||| ||||| |||||||||||||||| ||||||| | ||| |||    
T  76243 tggtgatgatttcaaagagtgtgcatcatgcatggcatggcatgtagttgtgtcataggttgccgaaagggcgatttactctggtgccgaaacggcgatt 76144  T
Q  201 ta-ttatgtgccgaaagggcgatttatt 227  Q
    || |  |||||||| |||||||||||||    
T  76143 tactcttgtgccgagagggcgatttatt 76116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 159 - 362
Target Start/End: Complemental strand, 76161 - 75958
Alignment:
Q  159 ggtgccgtaagggcgatttactcttgtgccgagagggccatttattatgtgccgaaagggcgatttattcttgtgccaattggggcgatatccggatcat 258  Q
    ||||||| || ||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||    
T  76161 ggtgccgaaacggcgatttactcttgtgccgagagggcgatttattatgtgccgaacggacgatttattcttgtgccaattggggcgatatccggatcat 76062  T
Q  259 ggtcaagttgcatctcatgcatcatttgcataaaaatcgtattttgatttatgttatctgtattaagcttttgactcttatgtggtgagtgttttactgt 358  Q
    |||||||||||||||||| ||||||||||||||| |||||||||| |||| |||||| |||||  ||| |||||||||||||||||||||||||||||||    
T  76061 ggtcaagttgcatctcatccatcatttgcataaagatcgtatttttatttctgttatttgtatcgagcctttgactcttatgtggtgagtgttttactgt 75962  T
Q  359 tctt 362  Q
    ||||    
T  75961 tctt 75958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 156; Significance: 8e-83; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 159 - 362
Target Start/End: Complemental strand, 24499557 - 24499355
Alignment:
Q  159 ggtgccgtaagggcgatttactcttgtgccgagagggccatttattatgtgccgaaagggcgatttattcttgtgccaattggggcgatatccggatcat 258  Q
    ||||||||||||||||||||||||||||| |||| ||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24499557 ggtgccgtaagggcgatttactcttgtgcagagaaggcaatttattatgagccgaaagggcgatttattcttgtgccaattggggcgatatccggatcat 24499458  T
Q  259 ggtcaagttgcatctcatgcatcatttgcataaaaatcgtattttgatttatgttatctgtattaagcttttgactcttatgtggtgagtgttttactgt 358  Q
    |||||||||||||||||||||||| |||||| ||||| |||||||||||| |||||| |||||| ||||||||||||||||||||||||||| |||||||    
T  24499457 ggtcaagttgcatctcatgcatcaattgcat-aaaattgtattttgatttctgttatttgtattgagcttttgactcttatgtggtgagtgtcttactgt 24499359  T
Q  359 tctt 362  Q
    ||||    
T  24499358 tctt 24499355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 232 - 281
Target Start/End: Original strand, 9884369 - 9884418
Alignment:
Q  232 tgccaattggggcgatatccggatcatggtcaagttgcatctcatgcatc 281  Q
    ||||||||||||||||||||||||||||||| | |||||| |||||||||    
T  9884369 tgccaattggggcgatatccggatcatggtctatttgcatttcatgcatc 9884418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 127 - 225
Target Start/End: Complemental strand, 24499662 - 24499562
Alignment:
Q  127 catgcatggcatgacatgtagttgtgtcatagggtgcc-gtaagggcgatttactcttgtgccgagagggcca-tttattatgtgccgaaagggcgattt 224  Q
    ||||||| ||||||||||||||||||||||||| ||||  | ||||||||||||||| ||||||  ||||| | ||| ||  |||||| |||||||||||    
T  24499662 catgcatagcatgacatgtagttgtgtcataggttgccaatgagggcgatttactctggtgccgtaagggcgattttctttggtgccgtaagggcgattt 24499563  T
Q  225 a 225  Q
    |    
T  24499562 a 24499562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 232 - 280
Target Start/End: Complemental strand, 42077039 - 42076991
Alignment:
Q  232 tgccaattggggcgatatccggatcatggtcaagttgcatctcatgcat 280  Q
    |||||||||||||||||||||||||||||||   |||||| ||||||||    
T  42077039 tgccaattggggcgatatccggatcatggtctgtttgcatttcatgcat 42076991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 281
Target Start/End: Complemental strand, 9817739 - 9817693
Alignment:
Q  235 caattggggcgatatccggatcatggtcaagttgcatctcatgcatc 281  Q
    ||||||||||||||||||||||||| || | |||||| |||||||||    
T  9817739 caattggggcgatatccggatcatgatctatttgcatttcatgcatc 9817693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 278
Target Start/End: Original strand, 24423779 - 24423825
Alignment:
Q  232 tgccaattggggcgatatccggatcatggtcaagttgcatctcatgc 278  Q
    |||||| |||||||||||||||||||||||  |||||||| ||||||    
T  24423779 tgccaaatggggcgatatccggatcatggtatagttgcatttcatgc 24423825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 50
Target Start/End: Complemental strand, 24499847 - 24499805
Alignment:
Q  8 atttgactctcttgtgctttagagaaaatgctttgatgaatgt 50  Q
    |||||| ||| |||| |||||||||||||||||||||||||||    
T  24499847 atttgattctattgttctttagagaaaatgctttgatgaatgt 24499805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 277
Target Start/End: Complemental strand, 21231387 - 21231342
Alignment:
Q  232 tgccaattggggcgatatccggatcatggtcaagttgcatctcatg 277  Q
    |||||||||||||||||||||||||||| || | |||||| |||||    
T  21231387 tgccaattggggcgatatccggatcatgatctatttgcatttcatg 21231342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1028 (Bit Score: 146; Significance: 8e-77; HSPs: 3)
Name: scaffold1028
Description:

Target: scaffold1028; HSP #1
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 160 - 364
Target Start/End: Original strand, 1301 - 1511
Alignment:
Q  160 gtgccgtaagggcgatttactcttgtgccgagagggccatttattatgtgccgaaagggcgatttattcttgtgccaattggggcgatatccggatcatg 259  Q
    |||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  1301 gtgccgtaagggcgatttactcttgtgccgagagggacatttattaggtgccgaaagggcgatttattcttgtgccaattggggcgatatccgaatcatg 1400  T
Q  260 gtcaagttgcatctcatg-------catcatttgcataaaaatcgtattttgatttatgttatctgtattaagcttttgactcttatgtggtgagtgttt 352  Q
    ||||||||||||||||||       ||||||||||||||| |||||||||  |||||| |||| |||||| |||||||||||||||||||||||||||||    
T  1401 gtcaagttgcatctcatgcatcattcatcatttgcataaagatcgtatttatatttat-ttatttgtattgagcttttgactcttatgtggtgagtgttt 1499  T
Q  353 tactgttcttct 364  Q
    ||||||||||||    
T  1500 tactgttcttct 1511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1028; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 1047 - 1248
Alignment:
Q  1 cattatgatttgactctcttgtgctttagagaaaatgctttgatgaatgtgatgaatattttgaaagaaaatttgaatatcttagttgatgctgtgaaaa 100  Q
    |||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| ||| ||||||||| | |||| ||||||||    
T  1047 cattatgatttgactctcttgtgcgttagagaaaatgctttcatgaatgtgatgaatattttgaaagaaagtttaaatatcttaatagatgttgtgaaaa 1146  T
Q  101 tggtgatgatttcaaagagtgcccatcatgcatggcatgacatgtagttgtgtcatagggtgccgtaagggcgatttactcttgtgccgagagggccatt 200  Q
     ||||||||||||||||||||  |||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| | ||||||  ||||| |||    
T  1147 aggtgatgatttcaaagagtgtgcatcatgcatggcatggcatgtagttgtgtcatagggtgccgtaagggtgatttactatggtgccgtaagggcgatt 1246  T
Q  201 ta 202  Q
    ||    
T  1247 ta 1248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1028; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 159 - 225
Target Start/End: Original strand, 1229 - 1295
Alignment:
Q  159 ggtgccgtaagggcgatttactcttgtgccgagagggccatttattatgtgccgaaagggcgattta 225  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||    
T  1229 ggtgccgtaagggcgatttactcttctgccgagagggccatttattatgtgccgtaagggcgattta 1295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 141; Significance: 7e-74; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 20601296 - 20601060
Alignment:
Q  1 cattatgatttgactctcttgtgctttagagaaaatgctttgatgaatgtgatgaatattttgaaagaaaatttgaatatcttagttgatgctgtgaaaa 100  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| ||||||||| |||||||||| ||||||||    
T  20601296 cattatgatttgactctcttgtgctttaaagaaaatgctttgatgaatgtgatgaatattttggaagaaagtttgaatattttagttgatgttgtgaaaa 20601197  T
Q  101 tggtgatgatttcaaagagtgcccatcatgcatggcatgacatgtagttgtgtcatagggtgcc-gtaagggcgatttactcttgtgccgagagggccat 199  Q
    |||| ||||||||||||||||  ||||||||||| |||||||||||||||||||||||| ||||  | ||||||||||||||| ||||||  | ||| ||    
T  20601196 tggttatgatttcaaagagtgtgcatcatgcatgtcatgacatgtagttgtgtcataggttgccaatgagggcgatttactctggtgccgtaaaggcgat 20601097  T
Q  200 ttattat-gtgccgaaagggcgatttattcttgtgcc 235  Q
    ||| | | ||||||||||||||||||| |||||||||    
T  20601096 ttactctggtgccgaaagggcgatttactcttgtgcc 20601060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 159 - 364
Target Start/End: Complemental strand, 20601089 - 20600885
Alignment:
Q  159 ggtgccgtaagggcgatttactcttgtgccgagagggccatttattatgtgccgaaagggcgatttattcttgtgccaattggggcgatatccggatcat 258  Q
    ||||||| |||||||||||||||||||||||||||||| |||||||||||||||||  | ||||||||||||||| |||||||||||||||| |||||||    
T  20601089 ggtgccgaaagggcgatttactcttgtgccgagagggcgatttattatgtgccgaacagacgatttattcttgtgtcaattggggcgatatctggatcat 20600990  T
Q  259 ggtcaagttgcatctcatgcatcatttgcataaaaatcgtattttgatttatgttatctgtattaagcttttgactcttatgtggtgagtgttttactgt 358  Q
    |||||||||||||||||||||||||||||||||| |||||||||  |||||| |||| || ||| ||| ||||||||||||||||||||||||||| |||    
T  20600989 ggtcaagttgcatctcatgcatcatttgcataaagatcgtatttatatttat-ttatttgcattgagcctttgactcttatgtggtgagtgttttattgt 20600891  T
Q  359 tcttct 364  Q
    ||||||    
T  20600890 tcttct 20600885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 232 - 354
Target Start/End: Complemental strand, 2269156 - 2269034
Alignment:
Q  232 tgccaattggggcgatatccggatcatggtcaagttgcatctcatgcatcatttgcataaaaatcgtattttgatttatgttatctgtattaagcttttg 331  Q
    |||||||||||||| ||||| |||||||||| |||||||||||||||||||||||||||||  | |||||||  ||| |||||| |||||| || ||||     
T  2269156 tgccaattggggcgctatcctgatcatggtctagttgcatctcatgcatcatttgcataaagttagtattttagtttctgttatttgtattgagattttc 2269057  T
Q  332 actcttatgtggtgagtgtttta 354  Q
    ||| |||||||||||||| ||||    
T  2269056 acttttatgtggtgagtgcttta 2269034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 232 - 285
Target Start/End: Complemental strand, 11917730 - 11917677
Alignment:
Q  232 tgccaattggggcgatatccggatcatggtcaagttgcatctcatgcatcattt 285  Q
    |||||||||||||||||||  ||||||||||||||||||| |||||||||||||    
T  11917730 tgccaattggggcgatatctagatcatggtcaagttgcatgtcatgcatcattt 11917677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 127 - 277
Target Start/End: Original strand, 42833824 - 42833976
Alignment:
Q  127 catgcatggcatgacatgtagttgtgtcatagggtgccgta-agggcgatttactcttgtgccgagagggccatttattatg-tgccgaaagggcgattt 224  Q
    ||||||| ||||| ||||||||||||||||||| |    |  |||||||||||||||  ||  || ||||| ||||| | || || ||||||||||||||    
T  42833824 catgcatagcatggcatgtagttgtgtcataggtttttattgagggcgatttactctgatgttgaaagggcgatttactctggtgtcgaaagggcgattt 42833923  T
Q  225 attcttgtgccaattggggcgatatccggatcatggtcaagttgcatctcatg 277  Q
    ||| ||||| ||||||||| |||||| | ||||||||| |||||||| |||||    
T  42833924 attattgtgtcaattggggtgatatctgtatcatggtctagttgcatttcatg 42833976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 232 - 281
Target Start/End: Complemental strand, 13379594 - 13379545
Alignment:
Q  232 tgccaattggggcgatatccggatcatggtcaagttgcatctcatgcatc 281  Q
    ||||||||||||||||||||||||||||||| | |||||| |||||||||    
T  13379594 tgccaattggggcgatatccggatcatggtctatttgcatttcatgcatc 13379545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 50
Target Start/End: Original strand, 42833655 - 42833688
Alignment:
Q  17 tcttgtgctttagagaaaatgctttgatgaatgt 50  Q
    |||||| |||||||||||||||||||||||||||    
T  42833655 tcttgttctttagagaaaatgctttgatgaatgt 42833688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0582 (Bit Score: 130; Significance: 3e-67; HSPs: 2)
Name: scaffold0582
Description:

Target: scaffold0582; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 9691 - 9499
Alignment:
Q  1 cattatgatttgactctcttgtgctttagagaaaatgctttgatgaatgtgatgaatattttgaaagaaaatttgaatatcttagttgatgctgtgaaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||| |||||||||||||||||||| ||||||||    
T  9691 cattatgatttgactctcttgtgctttagagaaaatgctttgatgaatgt---------tttgaaagaaagtttgaatatcttagttgatgttgtgaaaa 9601  T
Q  101 tggtgatgatttcaaagagtgcccatcatgcatggcatgacatgtagttgtgtcatagggtgccgtaagggcgatttactcttgtgccgagagggccatt 200  Q
    |||||||||||||||||||||  |||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| ||||||  ||||| |||    
T  9600 tggtgatgatttcaaagagtgtgcatcatgcatggcatggcatgtagttgtgtcataggatgccgtaagggcgatttactctggtgccgtaagggcgatt 9501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0582; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 324 - 364
Target Start/End: Complemental strand, 9493 - 9453
Alignment:
Q  324 agcttttgactcttatgtggtgagtgttttactgttcttct 364  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  9493 agcttttgactcttatgtggtgagtgttttactgttcttct 9453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 114; Significance: 1e-57; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 15210952 - 15211085
Alignment:
Q  1 cattatgatttgactctcttgtgctttagagaaaatgctttgatgaatgtgatgaatattttgaaagaaaatttgaatatcttagttgatgctgtgaaaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||    
T  15210952 cattatgatttgactctcttgtgctttagagaaaatgctttgatgaatgtgatgaatattttgaaagaaagtttgaatatcttagttgatgttgtgaaaa 15211051  T
Q  101 tggtgatgatttcaaagagtgcccatcatgcatg 134  Q
    ||| |||||||||||||||||  |||||||||||    
T  15211052 tggggatgatttcaaagagtgtgcatcatgcatg 15211085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 281
Target Start/End: Complemental strand, 31518596 - 31518547
Alignment:
Q  232 tgccaattggggcgatatccggatcatggtcaagttgcatctcatgcatc 281  Q
    |||||| | |||||||||||||||||||||| | |||||| |||||||||    
T  31518596 tgccaactagggcgatatccggatcatggtctacttgcatttcatgcatc 31518547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 280
Target Start/End: Complemental strand, 41942602 - 41942554
Alignment:
Q  232 tgccaattggggcgatatccggatcatggtcaagttgcatctcatgcat 280  Q
    ||||||||| |||||||||||||||||||||   |||||| ||||||||    
T  41942602 tgccaattgaggcgatatccggatcatggtctgtttgcatttcatgcat 41942554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0807 (Bit Score: 81; Significance: 5e-38; HSPs: 1)
Name: scaffold0807
Description:

Target: scaffold0807; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 109 - 1
Alignment:
Q  1 cattatgatttgactctcttgtgctttagagaaaatgctttgatgaatgtgatgaatattttgaaagaaaatttgaatatcttagttgatgctgtgaaaa 100  Q
    |||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| | |||| ||||||||    
T  109 cattatgatttgactctcttgtgcgttagagaaaatgctttcatgaatgtgatgaatattttgaaagaaagtttgaatatcttaatcgatgttgtgaaaa 10  T
Q  101 tggtgatga 109  Q
     ||||||||    
T  9 cggtgatga 1  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 232 - 281
Target Start/End: Complemental strand, 147986 - 147937
Alignment:
Q  232 tgccaattggggcgatatccggatcatggtcaagttgcatctcatgcatc 281  Q
    ||||||||||||||||||||||||||||||| | ||||||||||||||||    
T  147986 tgccaattggggcgatatccggatcatggtctacttgcatctcatgcatc 147937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0224 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: scaffold0224
Description:

Target: scaffold0224; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 127 - 277
Target Start/End: Original strand, 20904 - 21056
Alignment:
Q  127 catgcatggcatgacatgtagttgtgtcatagggtgccgta-agggcgatttactcttgtgccgagagggccatttattatg-tgccgaaagggcgattt 224  Q
    ||||||| ||||| ||||||||||||||||||| |    |  |||||||||||||||  ||  || ||||| ||||| | || || ||||||||||||||    
T  20904 catgcatagcatggcatgtagttgtgtcataggtttttattgagggcgatttactctgatgttgaaagggcgatttactctggtgtcgaaagggcgattt 21003  T
Q  225 attcttgtgccaattggggcgatatccggatcatggtcaagttgcatctcatg 277  Q
    ||| ||||| ||||||||| |||||| | ||||||||| |||||||| |||||    
T  21004 attattgtgtcaattggggtgatatctgtatcatggtctagttgcatttcatg 21056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0224; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 50
Target Start/End: Original strand, 20735 - 20768
Alignment:
Q  17 tcttgtgctttagagaaaatgctttgatgaatgt 50  Q
    |||||| |||||||||||||||||||||||||||    
T  20735 tcttgttctttagagaaaatgctttgatgaatgt 20768  T

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Target: scaffold0150 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0150
Description:

Target: scaffold0150; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 235 - 281
Target Start/End: Complemental strand, 35351 - 35305
Alignment:
Q  235 caattggggcgatatccggatcatggtcaagttgcatctcatgcatc 281  Q
    |||||||||||||||||||||||||||| | ||||||||||||||||    
T  35351 caattggggcgatatccggatcatggtctacttgcatctcatgcatc 35305  T

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Target: scaffold0022 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 235 - 280
Target Start/End: Original strand, 2646 - 2691
Alignment:
Q  235 caattggggcgatatccggatcatggtcaagttgcatctcatgcat 280  Q
    |||||||||||||||||||||||||||| | |||||| ||||||||    
T  2646 caattggggcgatatccggatcatggtctatttgcatttcatgcat 2691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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