View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11379_low_40 (Length: 368)
Name: NF11379_low_40
Description: NF11379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11379_low_40 |
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Alignment Details
Target: chr7 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 62 - 356
Target Start/End: Original strand, 6359029 - 6359323
Alignment:
| Q |
62 |
ctttttatgtcttaccctttctgtatattctttgatccatgtacaaatgaaattgatttacagtttatgtcgatgaagtcagatccttgagtatatgcag |
161 |
Q |
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| T |
6359029 |
ctttttatgtcttaccctttctgtatattctttgatccatgtacaaatgaaattgatttacagtttatgtcgatgaagtcagatccttgagtatatgcag |
6359128 |
T |
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| Q |
162 |
attatcaagaagctatatccatatataaaaggattgagaaactgcaaatcaattgatgcaaacacgagagacattttgaatttaagctcgtccttgtaat |
261 |
Q |
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| T |
6359129 |
attatcaagaagctatatccatatataaaaggattgagaaactgcaaatcaattgatgcaaacacgagagacgttttgaatttaagctcgtccttgtaat |
6359228 |
T |
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| Q |
262 |
tctctctatctactactgttattatttcgttattaaatatattgtttgataccttcaagctttacagaaatctcgatccaataacctaatccctt |
356 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
6359229 |
tctctctatttactactgttattatttcgttattaaatatattgtttgataccttcaagcattacagaaatctcgatccaataacctaatccctt |
6359323 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 101 - 209
Target Start/End: Complemental strand, 32857393 - 32857285
Alignment:
| Q |
101 |
tgtacaaatgaaattgatttacagtttatgtcgatgaagtcagatccttgagtatatgcagattatcaagaagctatatccatatataaaaggattgaga |
200 |
Q |
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|||||||||||||||||||| | |||||| || ||||||||| |||||||| |||||| ||||| ||| |||||||| ||||| |||||| |||||||| |
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| T |
32857393 |
tgtacaaatgaaattgatttgctgtttatatccatgaagtcaaatccttgactatatgtagattctcatgaagctatttccatccataaaatgattgaga |
32857294 |
T |
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| Q |
201 |
aactgcaaa |
209 |
Q |
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| T |
32857293 |
aactgcaaa |
32857285 |
T |
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