View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11379_low_43 (Length: 360)
Name: NF11379_low_43
Description: NF11379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11379_low_43 |
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Alignment Details
Target: chr4 (Bit Score: 275; Significance: 1e-154; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 17 - 349
Target Start/End: Complemental strand, 17444251 - 17443917
Alignment:
| Q |
17 |
aaaattaacattcggtacacaaggtatttagggtttaaacccggcccctgcatatagcgcgtgtgtatgtgnnnnnnn--cttttaaattagtattagta |
114 |
Q |
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| T |
17444251 |
aaaattaacattcggtacacaaggtatttagggtttaaacccggcccctacatatcgcgcgtgtgtatgtgtttttttttctttttcattagtattagta |
17444152 |
T |
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| Q |
115 |
tgacaaacactacacttataattcctcccataatttcaacttgcagggtttcatgctcttttggaaattcaatagtcttcacaattgataatggagccaa |
214 |
Q |
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| T |
17444151 |
tgacaaacactacacttataattcctcccataatttcaacttgcagggttgcatgctcttttggaaattcaatagtcttcacaattgataatggagccaa |
17444052 |
T |
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| Q |
215 |
cccttactattttgcaacagaaatagaatatgaaaatggaaatggtgacctagttcaagttgaattgagccaatcaaacacatggcatccaatgtttcgt |
314 |
Q |
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| T |
17444051 |
cccatactgttttgcaacagaaatagaatatgaaaatggaaatggtgacctagttcaagttgaattgagccaatcaaacacatggcatccaatgtttcgt |
17443952 |
T |
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| Q |
315 |
tcttggggttcaagatgggcttttaacacaggttc |
349 |
Q |
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| T |
17443951 |
tcttggggttcaagatgggcttttaacacaggttc |
17443917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 201 - 349
Target Start/End: Complemental strand, 9628929 - 9628781
Alignment:
| Q |
201 |
gataatggagccaacccttactattttgcaacagaaatagaatatgaaaatggaaatggtgacctagttcaagttgaattgagccaatcaaacacatggc |
300 |
Q |
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| T |
9628929 |
gatagtggagccaacccatactattttgctacagaaatagaatatgaaaatggagatggtgacattgtatctgtagaattgaatcaatcaagaagatgga |
9628830 |
T |
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| Q |
301 |
atccaatgtttcgttcttggggttcaagatgggcttttaacacaggttc |
349 |
Q |
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| T |
9628829 |
ttccaatgcaacgttcttggggtgcaagatgggctttgaactcaggttc |
9628781 |
T |
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