View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11379_low_44 (Length: 358)
Name: NF11379_low_44
Description: NF11379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11379_low_44 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 12 - 280
Target Start/End: Original strand, 36773518 - 36773786
Alignment:
| Q |
12 |
gaaaatcgggtcatcatagggtttttcctttaaaagtgtgtttaaaaattatacttaggcttgattctaaagtaatgtaaaattttttgatatatcaaaa |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
36773518 |
gaaaatcgggtcatcatagggtttttcctttaaaagtgtgtttaaaaattatacttaggcttgattctaaagtaatgtaaatttttttgatatatcaaaa |
36773617 |
T |
|
| Q |
112 |
tggaaatatgtaactatcaaaatgtgtcaaatactatttttatttttatgcaatggaataagagatattcatactactacaatgctgtaaataatgatat |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36773618 |
tggaaatatgtaactatcaaaatgtgtcaaatactatttttatttttatgcaatggaataagagatattcatactactacaatgctgtaaataatgatat |
36773717 |
T |
|
| Q |
212 |
gcaattacatcagttacaacatcaagtagtcactttgatactccatcatcgtccgtgtgtcgcctgcag |
280 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
36773718 |
gcaattacatcagttacaacatcaagtagtcactttgatcctccatcatcgtccgtgtgtcgcctgcag |
36773786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University