View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11379_low_46 (Length: 352)
Name: NF11379_low_46
Description: NF11379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11379_low_46 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 18 - 352
Target Start/End: Complemental strand, 42309474 - 42309138
Alignment:
| Q |
18 |
gtatgcaattgatgcattttgttcaaagatacagacactacatttggatttcctgcacatcaagtttttaattgaaaattaaaatgactctttattttat |
117 |
Q |
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| T |
42309474 |
gtatgcaattgatgcattttgttcaaagatacagacactacatttggatttcctgcacatcaagtttttgattgaaaattaaaatgactctttattttat |
42309375 |
T |
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| Q |
118 |
t--gtctaatagtcattttttaaaacataatttgcttacttgcaagttcatctgcttcttcatctttcaatattgctgcaaaaccattgatgtgtctgtt |
215 |
Q |
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| T |
42309374 |
tttgtctaatagtcattttttaaaacataatttgcttacttgcaagctcatctgcttcttcatctttcaatattgctgcaaaaccattgatgtgtctgtt |
42309275 |
T |
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| Q |
216 |
ataggagtagaaaattgcatcctttgctttctcattgctgtgattatttatttataaaataagctattattttcttttcatccattttggagaaattaat |
315 |
Q |
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| T |
42309274 |
ataggagtagaaaattgcatcctttgctttctcattgctgtgattatttatttataaaataagctattattttcttttcatccattttggagaaattaat |
42309175 |
T |
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| Q |
316 |
tggaattgataataatttctaatttaaatacctccct |
352 |
Q |
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| T |
42309174 |
tggaattgataaaaatttctaatttaaatacctccct |
42309138 |
T |
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