View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11379_low_47 (Length: 351)
Name: NF11379_low_47
Description: NF11379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11379_low_47 |
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| [»] scaffold0044 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 14 - 334
Target Start/End: Original strand, 14133552 - 14133872
Alignment:
| Q |
14 |
agacacatagttgaaacaggcttgaccttgttagatcattctaaggtgcccttatgtttctaggattacgccttcttaacagccacctatctcattaaca |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14133552 |
agacacatagttgaaacaggcttgaccttgttagatcattctaaggtgcccttatgtttctaggattacgccttcttaacagccacctatctcattaaca |
14133651 |
T |
|
| Q |
114 |
gattgttatctcatactcttggtaacaagtcaccatttttcatgcttcaccttcacattcctgagtacaagtttttaaagagttttggctttgtttgttt |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14133652 |
gattgttatctcatactcttggtaacaagtcaccatttttcatgcttcaccttcacattcctgagtacaagtttttaaagagttttggctttgtttgttt |
14133751 |
T |
|
| Q |
214 |
cccttttaccaaaccatacaacactcaaaaactagaatttcgttcaaaagagtgtgtgtttcttgcgtactcaccatctcataaaggttacaagtgtcta |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
14133752 |
cccttttaccaaaccatacaacactcaaaaactagaatttcgttcaaaagagtgtgtgtttcttgcgtactcaccatctcataaaggttataagtgtcta |
14133851 |
T |
|
| Q |
314 |
gaccccacaaggaaaaatttt |
334 |
Q |
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||||||||||||||||||||| |
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| T |
14133852 |
gaccccacaaggaaaaatttt |
14133872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 66; Significance: 4e-29; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 137 - 306
Target Start/End: Complemental strand, 45572780 - 45572611
Alignment:
| Q |
137 |
aacaagtcaccatttttcatgcttcaccttcacattcctgagtacaagtttttaaagagttttggctttgtttgtttcccttttaccaaaccatacaaca |
236 |
Q |
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| T |
45572780 |
aacaagtccccatttttcctgcttcatcttcaaattcctgattataaatttttaaaaagctttgggtgctcatgtttcccttttaccagaccctacaaca |
45572681 |
T |
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| Q |
237 |
ctcaaaaactagaatttcgttcaaaagagtgtgtgtttcttgcgtactcaccatctcataaaggttacaa |
306 |
Q |
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||| ||||||||||| ||||||||||||||||||||||||| || || || ||||||||||| ||||| |
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| T |
45572680 |
atcacaaactagaattacgttcaaaagagtgtgtgtttcttggttattctccctctcataaaggatacaa |
45572611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 148 - 306
Target Start/End: Original strand, 17992475 - 17992633
Alignment:
| Q |
148 |
atttttcatgcttcaccttcacattcctgagtacaagtttttaaagagttttggctttgtttgtttcccttttaccaaaccatacaacactcaaaaacta |
247 |
Q |
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| T |
17992475 |
atttttcctgcttcatcttcaaattcctgattacaaatttttaaaaagctttggttgctcatgttttccttttaccagaccctacaacaatcacaaacta |
17992574 |
T |
|
| Q |
248 |
gaatttcgttcaaaagagtgtgtgtttcttgcgtactcaccatctcataaaggttacaa |
306 |
Q |
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||||| ||||||||||||||||||||||||| || ||||| ||||||||||| ||||| |
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| T |
17992575 |
gaattacgttcaaaagagtgtgtgtttcttggatattcaccctctcataaaggatacaa |
17992633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 137 - 306
Target Start/End: Complemental strand, 34527706 - 34527537
Alignment:
| Q |
137 |
aacaagtcaccatttttcatgcttcaccttcacattcctgagtacaagtttttaaagagttttggctttgtttgtttcccttttaccaaaccatacaaca |
236 |
Q |
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||||| || ||||||||| ||||||| ||||| |||||||| || || |||||||| || ||||| | |||||||||||||||| ||| ||||||| |
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| T |
34527706 |
aacaaatccccatttttcctgcttcatcttcaaattcctgattataaatttttaaaaagctttgggtgctcatgtttcccttttaccagaccctacaaca |
34527607 |
T |
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| Q |
237 |
ctcaaaaactagaatttcgttcaaaagagtgtgtgtttcttgcgtactcaccatctcataaaggttacaa |
306 |
Q |
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||| ||||||||||| ||||||||||||||||||||||||| || || || ||||||||||| ||||| |
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| T |
34527606 |
atcacaaactagaattacgttcaaaagagtgtgtgtttcttggttattctccctctcataaaggatacaa |
34527537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 137 - 306
Target Start/End: Complemental strand, 35026912 - 35026743
Alignment:
| Q |
137 |
aacaagtcaccatttttcatgcttcaccttcacattcctgagtacaagtttttaaagagttttggctttgtttgtttcccttttaccaaaccatacaaca |
236 |
Q |
| |
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||||| || ||||||||| ||||||| ||||| |||||||| || || |||||||| || ||||| | |||||||||||||||| ||| ||||||| |
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| T |
35026912 |
aacaaatccccatttttcctgcttcatcttcaaattcctgattataaatttttaaaaagctttgggtgctcatgtttcccttttaccagaccctacaaca |
35026813 |
T |
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| Q |
237 |
ctcaaaaactagaatttcgttcaaaagagtgtgtgtttcttgcgtactcaccatctcataaaggttacaa |
306 |
Q |
| |
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||| ||||||||||| |||||||||||||||||||||||| || || || ||||||||||| ||||| |
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| T |
35026812 |
atcacaaactagaattatgttcaaaagagtgtgtgtttcttggttattctccctctcataaaggatacaa |
35026743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0044 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: scaffold0044
Description:
Target: scaffold0044; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 8 - 312
Target Start/End: Original strand, 77474 - 77778
Alignment:
| Q |
8 |
aagcagagacacatagttgaaacaggcttgaccttgttagatcattctaaggtgcccttatgtttctaggattacgccttcttaacagccacctatctca |
107 |
Q |
| |
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||||| || ||||| |||||||||||| | ||| | |||| |||| |||| |||| |||||||| | |||| | ||||| |||| ||||||||||||| |
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| T |
77474 |
aagcacaggcacattgttgaaacaggcctaaccctattagctcatgctaaaatgcctttatgtttttgggatcatgcctttctaactgccacctatctca |
77573 |
T |
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| Q |
108 |
ttaacagattgttatctcatactcttggtaacaagtcaccatttttcatgcttcaccttcacattcctgagtacaagtttttaaagagttttggctttgt |
207 |
Q |
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|||| ||| | || | | |||||||||||| ||||| || || ||||||||| | || |||||||| || || || || ||| ||||||| | || |
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| T |
77574 |
ttaatagactaccttcccctgttcttggtaacaaatcacccttctttatgcttcacttccagattcctgattataaattcttgaagtgttttggttgtgc |
77673 |
T |
|
| Q |
208 |
ttgtttcccttttaccaaaccatacaacactcaaaaactagaatttcgttcaaaagagtgtgtgtttcttgcgtactcaccatctcataaaggttacaag |
307 |
Q |
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|||||||||||||||| ||| || |||| ||| ||||| |||||||| ||||||||||| | || ||| ||| |||||| |||||||||| |||||| |
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| T |
77674 |
ctgtttcccttttaccagaccttataacagtcataaactggaatttcgctcaaaagagtgcattttcattgggtattcaccaactcataaaggatacaag |
77773 |
T |
|
| Q |
308 |
tgtct |
312 |
Q |
| |
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||||| |
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|
| T |
77774 |
tgtct |
77778 |
T |
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