View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11379_low_52 (Length: 337)
Name: NF11379_low_52
Description: NF11379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11379_low_52 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 297; Significance: 1e-167; HSPs: 21)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 329
Target Start/End: Complemental strand, 30337492 - 30337164
Alignment:
| Q |
1 |
tctcgtccaaacacttttggttcagcaataatggagccggtttggcgcccttcagctacttgatctcggatttccctaagagttccacctgtctatagag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||| |
|
|
| T |
30337492 |
tctcgtccaaacacttttggttcagcaataatggagccggtttggcgcccttcagctacttgatctgggatttccctaagagttccacccatctgtagag |
30337393 |
T |
|
| Q |
101 |
aaaacttgttcttactttcagcaatatcatctaacctccttgtaatctcttttaacctgttaccgatctcatggcgaaacttgatgttctttggtttgaa |
200 |
Q |
| |
|
||||||||||||||| ||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30337392 |
aaaacttgttcttacgttcagcaatattatctaacctccttgtaatctctttcaacctgttaccgatctcatggcgaaacttgatgttctttggtttgaa |
30337293 |
T |
|
| Q |
201 |
agaggtaaatcctctcagtcgacaagacttgatcgagtactcatcaaggatatcatcgagcacataaacagcatctttgaggtcttgtaaccatagctta |
300 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30337292 |
agaggtaaatcctctcagtcgacaagactcgatcgagtactcatcaaggatatcatcgagcacataaacagcatctttgaggtcttgtaaccatagctta |
30337193 |
T |
|
| Q |
301 |
atagagagttctttgaattgtttcttctc |
329 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
30337192 |
atagagagttctttgaattgtttcttctc |
30337164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 329
Target Start/End: Original strand, 30750785 - 30751113
Alignment:
| Q |
1 |
tctcgtccaaacacttttggttcagcaataatggagccggtttggcgcccttcagctacttgatctcggatttccctaagagttccacctgtctatagag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||| |
|
|
| T |
30750785 |
tctcgtccaaacacttttggttcagcaataatggagccggtttggcgcccttcagctacttgatctgggatttccctaagagttccacccatctgtagag |
30750884 |
T |
|
| Q |
101 |
aaaacttgttcttactttcagcaatatcatctaacctccttgtaatctcttttaacctgttaccgatctcatggcgaaacttgatgttctttggtttgaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |
|
|
| T |
30750885 |
aaaacttgttcttactttcagcaatatcatctaacctccttgtaatctcttttaacctgttaccaatctcatggcgaaacatgatgttctttggtttgaa |
30750984 |
T |
|
| Q |
201 |
agaggtaaatcctctcagtcgacaagacttgatcgagtactcatcaaggatatcatcgagcacataaacagcatctttgaggtcttgtaaccatagctta |
300 |
Q |
| |
|
||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30750985 |
agaggtacatcctctcagtcgacaagacttaatcgagtactcatcaaggatatcatcgagcacataaacagcatctttgaggtcttgtaaccatagctta |
30751084 |
T |
|
| Q |
301 |
atagagagttctttgaattgtttcttctc |
329 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
30751085 |
atagagagttctttgaattgtttcttctc |
30751113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 329
Target Start/End: Original strand, 30061511 - 30061839
Alignment:
| Q |
1 |
tctcgtccaaacacttttggttcagcaataatggagccggtttggcgcccttcagctacttgatctcggatttccctaagagttccacctgtctatagag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| ||| ||||| |
|
|
| T |
30061511 |
tctcgtccaaacacttttggttcagcaataatggagccggtttggcgcccttcagctacttgatctgggatttccctaagagtgccacccatctgtagag |
30061610 |
T |
|
| Q |
101 |
aaaacttgttcttactttcagcaatatcatctaacctccttgtaatctcttttaacctgttaccgatctcatggcgaaacttgatgttctttggtttgaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| ||||||||||||||||||| |
|
|
| T |
30061611 |
aaaacttgttcttactttcagcaatatcatctaacctccttgtaatctctttgaacctgttaccaatctcatggcgaaacatgatgttctttggtttgaa |
30061710 |
T |
|
| Q |
201 |
agaggtaaatcctctcagtcgacaagacttgatcgagtactcatcaaggatatcatcgagcacataaacagcatctttgaggtcttgtaaccatagctta |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
30061711 |
agaggtaaatcctctcagtcgacaagacttgatcgagtactcatcaaggatatcatcgagcacataaacaccatctttgaggtcttgtaaccatagctta |
30061810 |
T |
|
| Q |
301 |
atagagagttctttgaattgtttcttctc |
329 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
30061811 |
atagagagttctttgaattgtttcttctc |
30061839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 32 - 329
Target Start/End: Complemental strand, 30712364 - 30712067
Alignment:
| Q |
32 |
tggagccggtttggcgcccttcagctacttgatctcggatttccctaagagttccacctgtctatagagaaaacttgttcttactttcagcaatatcatc |
131 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
30712364 |
tggagctggtttggcgcccttcagctacttgatctgggatttccctaagagttccacccatctgtagagaaaacttgttcttactttcagcaatatcatc |
30712265 |
T |
|
| Q |
132 |
taacctccttgtaatctcttttaacctgttaccgatctcatggcgaaacttgatgttctttggtttgaaagaggtaaatcctctcagtcgacaagacttg |
231 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| ||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||| | |
|
|
| T |
30712264 |
taacctccttgtaatctctttgaacctgttaccaatctcatggcgaaacatgatgttctttagtttgaaagaggtaaatcctctcagtcgaaaagactcg |
30712165 |
T |
|
| Q |
232 |
atcgagtactcatcaaggatatcatcgagcacataaacagcatctttgaggtcttgtaaccatagcttaatagagagttctttgaattgtttcttctc |
329 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30712164 |
atcgagtactcatcaaggatatcatcgagcacataaacagcatctttgaggtcttgtaaccatagcttaatagagagttctttgaattgtttcttctc |
30712067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 1 - 329
Target Start/End: Complemental strand, 30676255 - 30675927
Alignment:
| Q |
1 |
tctcgtccaaacacttttggttcagcaataatggagccggtttggcgcccttcagctacttgatctcggatttccctaagagttccacctgtctatagag |
100 |
Q |
| |
|
||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||| |
|
|
| T |
30676255 |
tctcgtccaaacacttttgattcagcaataattgagccggtttggcgcccttcagctacttgatctgggatttccctaagagttccacccatctgtagag |
30676156 |
T |
|
| Q |
101 |
aaaacttgttcttactttcagcaatatcatctaacctccttgtaatctcttttaacctgttaccgatctcatggcgaaacttgatgttctttggtttgaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |||||||||||||||||| |
|
|
| T |
30676155 |
aaaacttgttcttactttcagcaatatcatctaacctccttgtaatctcttttaacctgttgccgatctcactgcgaaacatgatgttctttggtttgag |
30676056 |
T |
|
| Q |
201 |
agaggtaaatcctctcagtcgacaagacttgatcgagtactcatcaaggatatcatcgagcacataaacagcatctttgaggtcttgtaaccatagctta |
300 |
Q |
| |
|
||||| ||||||| ||| ||| ||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30676055 |
agaggatgatcctctaagttgaccagacttgattgaatactcatcaaggatatcatcgagcacataaacagcatctttgaggtcttgtaaccatagctta |
30675956 |
T |
|
| Q |
301 |
atagagagttctttgaattgtttcttctc |
329 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
30675955 |
atagagagttctttgaattgtttcttctc |
30675927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 32 - 329
Target Start/End: Original strand, 30484571 - 30484868
Alignment:
| Q |
32 |
tggagccggtttggcgcccttcagctacttgatctcggatttccctaagagttccacctgtctatagagaaaacttgttcttactttcagcaatatcatc |
131 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||| ||||| ||||||||||| |||| |||| |||||||||||||||||| ||||||||||||||||| |
|
|
| T |
30484571 |
tggagctggtttggcgcccttcagctacttgatctgggattaccctaagagtttcacccgtctgtagagaaaacttgttctttctttcagcaatatcatc |
30484670 |
T |
|
| Q |
132 |
taacctccttgtaatctcttttaacctgttaccgatctcatggcgaaacttgatgttctttggtttgaaagaggtaaatcctctcagtcgacaagacttg |
231 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| | |
|
|
| T |
30484671 |
taacctccttgtaatctctttcaacctgttaccaatctcatggcgaaacatgatgttctttggtttgaaagaggtaaatcctctgagtcgacaagactcg |
30484770 |
T |
|
| Q |
232 |
atcgagtactcatcaaggatatcatcgagcacataaacagcatctttgaggtcttgtaaccatagcttaatagagagttctttgaattgtttcttctc |
329 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30484771 |
atcgagtactcatcaaggatatcatcgagcacataaacagcatctttgaggtcttgtaaccatagcttaatagagagttctttgaattgtttcttctc |
30484868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 1 - 326
Target Start/End: Original strand, 29854450 - 29854775
Alignment:
| Q |
1 |
tctcgtccaaacacttttggttcagcaataatggagccggtttggcgcccttcagctacttgatctcggatttccctaagagttccacctgtctatagag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||| |||| ||||||||||| || | | ||||| ||| | | ||| | |||| |
|
|
| T |
29854450 |
tctcgtccaaacacttttggttcagcaataatggagctggtttgacgccattcagctacttcatttgagctttccttaacaatagtaccctcccgtagaa |
29854549 |
T |
|
| Q |
101 |
aaaacttgttcttactttcagcaatatcatctaacctccttgtaatctcttttaacctgttaccgatctcatggcgaaacttgatgttctttggtttgaa |
200 |
Q |
| |
|
|||||||||||||||| |||||||||||||| || |||||||||||||||| |||||||| |||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
29854550 |
aaaacttgttcttactatcagcaatatcatccaatttccttgtaatctctttcaacctgttgccgatctcatggcgaaacatgatgttctttggtttgaa |
29854649 |
T |
|
| Q |
201 |
agaggtaaatcctctcagtcgacaagacttgatcgagtactcatcaaggatatcatcgagcacataaacagcatctttgaggtcttgtaaccatagctta |
300 |
Q |
| |
|
|||||| |||||||| ||| ||| ||||||||| || ||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||| |||| |
|
|
| T |
29854650 |
agaggttaatcctctaagttgaccagacttgattgaacactcatcaaggatatcatcgagcacataaacagcatctttgagttgttgtagccatacctta |
29854749 |
T |
|
| Q |
301 |
atagagagttctttgaattgtttctt |
326 |
Q |
| |
|
|||||| | ||| ||| ||||||||| |
|
|
| T |
29854750 |
atagagtggtctgtgacttgtttctt |
29854775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 1 - 326
Target Start/End: Original strand, 29873313 - 29873638
Alignment:
| Q |
1 |
tctcgtccaaacacttttggttcagcaataatggagccggtttggcgcccttcagctacttgatctcggatttccctaagagttccacctgtctatagag |
100 |
Q |
| |
|
||||||||||| |||||||||||| |||||||||||| |||||| |||| ||||||||||| || | | ||||| ||| | | ||| | |||| |
|
|
| T |
29873313 |
tctcgtccaaatacttttggttcaacaataatggagctggtttgacgccattcagctacttcatttgagctttccttaacaatagtaccctcccgtagaa |
29873412 |
T |
|
| Q |
101 |
aaaacttgttcttactttcagcaatatcatctaacctccttgtaatctcttttaacctgttaccgatctcatggcgaaacttgatgttctttggtttgaa |
200 |
Q |
| |
|
|||||||||||||||| |||||||||||||| || ||||||||||||||||| |||||||| ||||||||| |||||||| ||||||| |||||||| || |
|
|
| T |
29873413 |
aaaacttgttcttactatcagcaatatcatccaatctccttgtaatctctttcaacctgttgccgatctcaaggcgaaacatgatgttatttggtttaaa |
29873512 |
T |
|
| Q |
201 |
agaggtaaatcctctcagtcgacaagacttgatcgagtactcatcaaggatatcatcgagcacataaacagcatctttgaggtcttgtaaccatagctta |
300 |
Q |
| |
|
|||| | ||||||| ||| ||| ||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| | ||||| ||||| |||| |
|
|
| T |
29873513 |
agagattgatcctctaagttgaccagacttgatcgagcactcatcaaggatatcatcgagcacataaacaacatctttgagttgttgtagccatacctta |
29873612 |
T |
|
| Q |
301 |
atagagagttctttgaattgtttctt |
326 |
Q |
| |
|
|||||| | ||| ||| ||||||||| |
|
|
| T |
29873613 |
atagagcggtctgtgacttgtttctt |
29873638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 32 - 302
Target Start/End: Original strand, 30436983 - 30437238
Alignment:
| Q |
32 |
tggagccggtttggcgcccttcagctacttgatctcggatttccctaagagttccacctgtctatagagaaaacttgttcttactttcagcaatatcatc |
131 |
Q |
| |
|
|||||| |||||||||||||||||| |||||||| || |||||||||||||| |||| || | ||||||||||||||||||| |||||||||| ||| |
|
|
| T |
30436983 |
tggagctggtttggcgcccttcagcagcttgatctgggctttccctaagagttacacccgtatggagagaaaacttgttcttacgttcagcaatacgatc |
30437082 |
T |
|
| Q |
132 |
taacctccttgtaatctcttttaacctgttaccgatctcatggcgaaacttgatgttctttggtttgaaagaggtaaatcctctcagtcgacaagacttg |
231 |
Q |
| |
|
||||||| |||||||||||| |||||||||||||||| |||||||||| || ||||| || ||| ||||||||||| ||||||| |
|
|
| T |
30437083 |
caacctccctgtaatctctttcaacctgttaccgatcttatggcgaaac---------------tttaaagatgtgaattttctcagtcgactagacttg |
30437167 |
T |
|
| Q |
232 |
atcgagtactcatcaaggatatcatcgagcacataaacagcatctttgaggtcttgtaaccatagcttaat |
302 |
Q |
| |
|
||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |||||| |
|
|
| T |
30437168 |
atcgaacactcatcaaggatgtcatcgagcacataaacagcatctttgaggtcttgtagccataccttaat |
30437238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 1 - 329
Target Start/End: Complemental strand, 30241348 - 30241032
Alignment:
| Q |
1 |
tctcgtccaaacacttttggttcagcaataatggagccggtttggcgcccttcagctacttgatctcggatttccctaagagttcca---cctgtctata |
97 |
Q |
| |
|
||||||||||||||||||||||||| |||||| | || |||||| |||| ||||||||| | || | || |||||| || ||||||| ||| || | |
|
|
| T |
30241348 |
tctcgtccaaacacttttggttcagtaataatagcgctggtttgacgccattcagctacgtcatttgggctttcccgaacagttccagtaccttcctgca |
30241249 |
T |
|
| Q |
98 |
gagaaaacttgttcttactttcagcaatatcatctaacctccttgtaatctcttttaacctgttaccgatctcatggcgaaacttgatgttctttggttt |
197 |
Q |
| |
|
|| ||||||| ||| | || |||||||||||||| ||||||| ||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
30241248 |
gaaaaaacttcttcctcctatcagcaatatcatccaacctcccgttaatctcttccaacctgttaccgatctcatggcgaaacttgag------------ |
30241161 |
T |
|
| Q |
198 |
gaaagaggtaaatcctctcagtcgacaagacttgatcgagtactcatcaaggatatcatcgagcacataaacagcatctttgaggtcttgtaaccatagc |
297 |
Q |
| |
|
|||||| |||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| | ||| | ||||| | |
|
|
| T |
30241160 |
---agaggttaatcctctcagtcgactagacttgatcgagcactcatcaaggatatcatcgagcacataaacaacatctttgagttgttgcagccatacc |
30241064 |
T |
|
| Q |
298 |
ttaatagagagttctttgaattgtttcttctc |
329 |
Q |
| |
|
||||||||| ||| ||| |||||||||||| |
|
|
| T |
30241063 |
ttaatagagcagtctgtgacttgtttcttctc |
30241032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 102 - 306
Target Start/End: Original strand, 30207762 - 30207966
Alignment:
| Q |
102 |
aaacttgttcttactttcagcaatatcatctaacctccttgtaatctcttttaacctgttaccgatctcatggcgaaacttgatgttctttggtttgaaa |
201 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||| || || || || |||||| | | ||| |||||||||||||||||||| |
|
|
| T |
30207762 |
aaacttgtttttactttcagcaatatcatctaacctccttgtaatctctttcaatcttttgccaatctcacgacaaaaaatgatgttctttggtttgaaa |
30207861 |
T |
|
| Q |
202 |
gaggtaaatcctctcagtcgacaagacttgatcgagtactcatcaaggatatcatcgagcacataaacagcatctttgaggtcttgtaaccatagcttaa |
301 |
Q |
| |
|
|| | | | | |||||| ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||| ||| | |
|
|
| T |
30207862 |
gatgatgaggcaataagtcgagcagactcgatcgagcactcatcaaggatatcatcgagcacataaacagcatctttgagttgttgtagccataccttta |
30207961 |
T |
|
| Q |
302 |
tagag |
306 |
Q |
| |
|
||||| |
|
|
| T |
30207962 |
tagag |
30207966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 106 - 329
Target Start/End: Original strand, 30401321 - 30401544
Alignment:
| Q |
106 |
ttgttcttactttcagcaatatcatctaacctccttgtaatctcttttaacctgttaccgatctcatggcgaaacttgatgttctttggtttgaaagagg |
205 |
Q |
| |
|
||||||||| | |||||||||||||| || || |||||||||||||| |||||||| ||||||| | |||||||| |||||||||||| ||||||||| |
|
|
| T |
30401321 |
ttgttcttaatatcagcaatatcatccaatcttcttgtaatctctttcaacctgttgccgatctgacggcgaaacacgatgttctttgggttgaaagaga |
30401420 |
T |
|
| Q |
206 |
taaatcctctcagtcgacaagacttgatcgagtactcatcaaggatatcatcgagcacataaacagcatctttgaggtcttgtaaccatagcttaataga |
305 |
Q |
| |
|
| |||| |||||| ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| | ||| | ||||| ||||||| | |
|
|
| T |
30401421 |
atgagcctccaagtcgagcagactcgatcgaacactcatcaaggatatcatcgagcacataaacagcatctttgagttgttggagccataccttaatata |
30401520 |
T |
|
| Q |
306 |
gagttctttgaattgtttcttctc |
329 |
Q |
| |
|
| ||||||| |||| ||||||| |
|
|
| T |
30401521 |
gctgtctttgacttgtctcttctc |
30401544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 127 - 281
Target Start/End: Complemental strand, 17417509 - 17417355
Alignment:
| Q |
127 |
tcatctaacctccttgtaatctcttttaacctgttaccgatctcatggcgaaacttgatgttctttggtttgaaagaggtaaatcctctcagtcgacaag |
226 |
Q |
| |
|
||||| || |||||||||||||||| ||||| | ||||||||| ||||||| |||||||||||||||||||| ||| | ||||| || |||| || |
|
|
| T |
17417509 |
tcatcaaatctccttgtaatctcttccaacctttggccgatctcacggcgaaatatgatgttctttggtttgaaataggatgagcctctaagccgaccag |
17417410 |
T |
|
| Q |
227 |
acttgatcgagtactcatcaaggatatcatcgagcacataaacagcatctttgag |
281 |
Q |
| |
|
||| ||| ||| |||||||||| |||||||| |||||||||||| |||||||||| |
|
|
| T |
17417409 |
actcgattgagcactcatcaagaatatcatctagcacataaacaacatctttgag |
17417355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 106 - 306
Target Start/End: Complemental strand, 30329700 - 30329503
Alignment:
| Q |
106 |
ttgttcttactttcagcaatatcatctaacctccttgtaatctcttttaacctgttaccgatctcatggcgaaacttgatgttctttggtttgaaagagg |
205 |
Q |
| |
|
||||||||| |||||||||| | |||||| || || ||||| ||||| ||||| || ||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
30329700 |
ttgttcttattttcagcaatcttatctaatcttctggtaatttctttcaacctatt---gatctcatggcgaaatacaatgttctttggtttgaaagagg |
30329604 |
T |
|
| Q |
206 |
taaatcctctcagtcgacaagacttgatcgagtactcatcaaggatatcatcgagcacataaacagcatctttgaggtcttgtaaccatagcttaataga |
305 |
Q |
| |
|
| ||||| | ||||| ||||| |||| || ||||||||||||||||||| |||||||| | | ||||||||| | ||| | ||||| ||||||||| |
|
|
| T |
30329603 |
atgagcctctaattcgaccagactcgatcaagcactcatcaaggatatcatcaagcacatatatatcatctttgatttgttgaagccatatcttaataga |
30329504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 2 - 306
Target Start/End: Original strand, 30476515 - 30476819
Alignment:
| Q |
2 |
ctcgtccaaacacttttggttcagcaataatggagccggtttggcgcccttcagctacttgatctcggatttccctaagagttcca-cctgtctatagag |
100 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| |||||||||| |||||| |||| || | | ||||||||| | || ||| || || | |
|
|
| T |
30476515 |
ctcgtccaaacactttgggttcagcaataatggagcttgtttggcgccattcagcaacttcatttggcctttccctaacaacgacaccctctc-gtaaaa |
30476613 |
T |
|
| Q |
101 |
aaaacttgttcttactttcagcaatatcatctaacctccttgtaatctcttttaacctgttaccgatctcatggcgaaacttgatgttctttggtttgaa |
200 |
Q |
| |
|
|||||||| |||||||||||||| | ||| || ||||||||||| ||||| ||||| || ||||| ||| |||||||| ||||||||| | ||||| |
|
|
| T |
30476614 |
gaaacttgtctttactttcagcaatttgatcgaatctccttgtaatttctttcaaccttttgccgatgtcacggcgaaacacaatgttctttaggttgaa |
30476713 |
T |
|
| Q |
201 |
agaggtaaatcctctcagtcgacaagacttgatcgagtactcatcaaggatatcatcgagcacataaacagcatctttgaggtcttgtaaccatagctta |
300 |
Q |
| |
|
| ||| | || | |||| || ||| | || || | |||||||| |||||||| |||||||| |||||||||||||| | ||| | ||||| |||| |
|
|
| T |
30476714 |
acaggacgaggctttaagtctactagattcaatggaacattcatcaagaatatcatcaagcacatatacagcatctttgagttgttggagccatacctta |
30476813 |
T |
|
| Q |
301 |
atagag |
306 |
Q |
| |
|
|||||| |
|
|
| T |
30476814 |
atagag |
30476819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #16
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 17984023 - 17984083
Alignment:
| Q |
1 |
tctcgtccaaacacttttggttcagcaataatggagccggtttggcgcccttcagctactt |
61 |
Q |
| |
|
||||||||||||||||||| ||||||||||| || || ||||||||||| |||||| |||| |
|
|
| T |
17984023 |
tctcgtccaaacacttttgattcagcaataacggggctggtttggcgccattcagccactt |
17984083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 54
Target Start/End: Complemental strand, 17417557 - 17417507
Alignment:
| Q |
4 |
cgtccaaacacttttggttcagcaataatggagccggtttggcgcccttca |
54 |
Q |
| |
|
||||||||||| |||||||||||||||| ||||| ||||||||||| |||| |
|
|
| T |
17417557 |
cgtccaaacacctttggttcagcaataaaggagctggtttggcgccattca |
17417507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 102 - 192
Target Start/End: Complemental strand, 30520491 - 30520401
Alignment:
| Q |
102 |
aaacttgttcttactttcagcaatatcatctaacctccttgtaatctcttttaacctgttaccgatctcatggcgaaacttgatgttcttt |
192 |
Q |
| |
|
||||||||| |||||||||||||||||||| || || ||||||| ||||| ||||| | || || | |||||||||| |||| |||||| |
|
|
| T |
30520491 |
aaacttgtttttactttcagcaatatcatcgaatctgtttgtaatttctttaaacctagtgccaattttatggcgaaacatgatattcttt |
30520401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 102 - 192
Target Start/End: Complemental strand, 30560831 - 30560741
Alignment:
| Q |
102 |
aaacttgttcttactttcagcaatatcatctaacctccttgtaatctcttttaacctgttaccgatctcatggcgaaacttgatgttcttt |
192 |
Q |
| |
|
||||||||| |||||||||||||||||||| || || ||||||| ||||| ||||| | || || | |||||||||| |||| |||||| |
|
|
| T |
30560831 |
aaacttgtttttactttcagcaatatcatcgaatctgtttgtaatttctttaaacctagtgccaattttatggcgaaacatgatattcttt |
30560741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 30207661 - 30207721
Alignment:
| Q |
1 |
tctcgtccaaacacttttggttcagcaataatggagccggtttggcgcccttcagctactt |
61 |
Q |
| |
|
||||| ||||| |||||||||||||||||||| |||| ||||| |||| ||| ||||||| |
|
|
| T |
30207661 |
tctcgcccaaatacttttggttcagcaataatagagctagtttgacgccattctgctactt |
30207721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 79
Target Start/End: Original strand, 30401215 - 30401291
Alignment:
| Q |
3 |
tcgtccaaacacttttggttcagcaataatggagccggtttggcgcccttcagctacttgatctcggatttccctaa |
79 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||||| | |||| |||| |||| |||||| |||| | ||||||||| |
|
|
| T |
30401215 |
tcgtccaaacacttctggtttagcaataatggagttgatttgacgccattcatctacttcatctgagctttccctaa |
30401291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 238; Significance: 1e-132; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 32 - 329
Target Start/End: Complemental strand, 20295518 - 20295221
Alignment:
| Q |
32 |
tggagccggtttggcgcccttcagctacttgatctcggatttccctaagagttccacctgtctatagagaaaacttgttcttactttcagcaatatcatc |
131 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
20295518 |
tggagctggtttggcgcccttcagctacttgatctgggatttccctaagagttccacccatctgtagagaaaacttgttcttactttcagcaatatcatc |
20295419 |
T |
|
| Q |
132 |
taacctccttgtaatctcttttaacctgttaccgatctcatggcgaaacttgatgttctttggtttgaaagaggtaaatcctctcagtcgacaagacttg |
231 |
Q |
| |
|
||||||||||||||||||||| |||||| |||||||||||||||||||| ||||||| |||||||||||||| |||||||||||||||||| ||||| | |
|
|
| T |
20295418 |
taacctccttgtaatctctttaaacctgctaccgatctcatggcgaaacgcgatgttcattggtttgaaagagttaaatcctctcagtcgaccagactcg |
20295319 |
T |
|
| Q |
232 |
atcgagtactcatcaaggatatcatcgagcacataaacagcatctttgaggtcttgtaaccatagcttaatagagagttctttgaattgtttcttctc |
329 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
20295318 |
atcgagtactcatcaaggatatcaccgagcacataaacagcatctttgaggtcttgtaaccattgcttaatagagagttctttgaattgtttcttctc |
20295221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 102 - 281
Target Start/End: Original strand, 52353201 - 52353380
Alignment:
| Q |
102 |
aaacttgttcttactttcagcaatatcatctaacctccttgtaatctcttttaacctgttaccgatctcatggcgaaacttgatgttctttggtttgaaa |
201 |
Q |
| |
|
|||||||||||| |||||||||| | ||| || ||||||||||| ||||| || ||||| || || ||||| |||||| || || ||||||||||| |
|
|
| T |
52353201 |
aaacttgttcttcctttcagcaacttgatcgaatctccttgtaatttctttcaatctgtttccaatatcatgacgaaacacaatattttttggtttgaat |
52353300 |
T |
|
| Q |
202 |
gaggtaaatcctctcagtcgacaagacttgatcgagtactcatcaaggatatcatcgagcacataaacagcatctttgag |
281 |
Q |
| |
|
|| | || || | ||||||| ||| |||||||| | |||||||||||||||||||| || ||||||||||||||||| |
|
|
| T |
52353301 |
gacgataaacccataagtcgactagatttgatcgaacattcatcaaggatatcatcgagaacgtaaacagcatctttgag |
52353380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 118; Significance: 4e-60; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 32 - 303
Target Start/End: Original strand, 26708502 - 26708758
Alignment:
| Q |
32 |
tggagccggtttggcgcccttcagctacttgatctcggatttccctaagagttccacctgtctatagagaaaacttgttcttactttcagcaatatcatc |
131 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| | || ||||||||||||||||||| |||| |||||||||||||||||||| |||||||||| ||| |
|
|
| T |
26708502 |
tggagctggtttggcgcccttcagctacttgatatgggctttccctaagagttccacccgtctgtagagaaaacttgttcttacgttcagcaatacgatc |
26708601 |
T |
|
| Q |
132 |
taacctccttgtaatctcttttaacctgttaccgatctcatggcgaaacttgatgttctttggtttgaaagaggtaaatcctctcagtcgacaagacttg |
231 |
Q |
| |
|
||||||| |||||||||||| |||||||||||||||| |||||||||| || |||||||| ||| | ||||||||| ||||||| |
|
|
| T |
26708602 |
caacctccctgtaatctctttcaacctgttaccgatcttatggcgaaac---------------tttaaagaggtgaattttttcagtcgactagacttg |
26708686 |
T |
|
| Q |
232 |
atcgagtactcatcaaggatatcatcgagcacataaacagcatctttgaggtcttgtaaccatagcttaata |
303 |
Q |
| |
|
|||||| | ||||||||||| |||||||||||||| ||| |||||||||||||||||| ||||| ||||||| |
|
|
| T |
26708687 |
atcgagcattcatcaaggatgtcatcgagcacatatacaacatctttgaggtcttgtagccataccttaata |
26708758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 325
Target Start/End: Complemental strand, 25292914 - 25292590
Alignment:
| Q |
1 |
tctcgtccaaacacttttggttcagcaataatggagccggtttggcgcccttcagctacttgatctcggatttccctaagagttccacc-tgtctataga |
99 |
Q |
| |
|
||||||||||| ||||||||||| |||||||| || | ||||||||| ||||||||||| | | | ||||||||| ||||||||| |||| | ||| |
|
|
| T |
25292914 |
tctcgtccaaatacttttggttcggcaataatagaactagtttggcgctattcagctacttcagttgagctttccctaacagttccaccctgtcga-aga |
25292816 |
T |
|
| Q |
100 |
gaaaacttgttcttactttcagcaatatcatctaacctccttgtaatctcttttaacctgttaccgatctcatggcgaaacttgatgttctttggtttga |
199 |
Q |
| |
|
||||||||||||| || ||||||||||||| || ||||||||||||||||| ||| |||| || || | |||| ||||| |||||||||||||||||| |
|
|
| T |
25292815 |
agaaacttgttcttagttgcagcaatatcatccaatctccttgtaatctctttcaacttgttgccaatgtaatggtgaaacatgatgttctttggtttga |
25292716 |
T |
|
| Q |
200 |
aagaggtaaatcctctcagtcgacaagacttgatcgagtactcatcaaggatatcatcgagcacataaacagcatctttgaggtcttgtaaccatagctt |
299 |
Q |
| |
|
|||||| | ||||| ||||||| ||| |||||| | |||||||||||||||||||||||||||| ||| |||||||||| | ||||| ||||| ||| |
|
|
| T |
25292715 |
aagaggatgagcctctaagtcgactagatttgatcaatcactcatcaaggatatcatcgagcacatatacaacatctttgagttgttgtagccatacctt |
25292616 |
T |
|
| Q |
300 |
aatagagagttctttgaattgtttct |
325 |
Q |
| |
|
||||||| | ||| ||| |||||||| |
|
|
| T |
25292615 |
aatagagcgatctgtgacttgtttct |
25292590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000008; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 7100560 - 7100620
Alignment:
| Q |
1 |
tctcgtccaaacacttttggttcagcaataatggagccggtttggcgcccttcagctactt |
61 |
Q |
| |
|
||||||||||||| |||||||||||||||| ||||| ||||||||||| |||||| |||| |
|
|
| T |
7100560 |
tctcgtccaaacatctttggttcagcaataaaggagctggtttggcgccattcagccactt |
7100620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 7580686 - 7580638
Alignment:
| Q |
1 |
tctcgtccaaacacttttggttcagcaataatggagccggtttggcgcc |
49 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||||||| ||||||||||| |
|
|
| T |
7580686 |
tctcgtccaaacacctttggttcggcaataatggagctggtttggcgcc |
7580638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 281
Target Start/End: Complemental strand, 7580457 - 7580415
Alignment:
| Q |
239 |
actcatcaaggatatcatcgagcacataaacagcatctttgag |
281 |
Q |
| |
|
||||||||||||||||||| |||||||| || ||||||||||| |
|
|
| T |
7580457 |
actcatcaaggatatcatcaagcacatacaccgcatctttgag |
7580415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 241 - 281
Target Start/End: Original strand, 7100785 - 7100825
Alignment:
| Q |
241 |
tcatcaaggatatcatcgagcacataaacagcatctttgag |
281 |
Q |
| |
|
||||||||||||||||| |||||||| || ||||||||||| |
|
|
| T |
7100785 |
tcatcaaggatatcatcaagcacatacaccgcatctttgag |
7100825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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